Analysis of interatomic Contacts of Structural Units in PDB entry:
6OZD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OZD entry

There are 2 chains in PDB entry 6OZD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 40	PRO 562
B	ALA 40	PRO 562

There are 20 helices in PDB entry 6OZD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	95	109	Right-handed alpha
Helix 2	AA2	A	139	154	Right-handed alpha
Helix 3	AA3	A	166	168	Right-handed 310
Helix 4	AA4	A	208	217	Right-handed alpha
Helix 5	AA5	A	341	345	Right-handed 310
Helix 6	AA6	A	392	400	Right-handed alpha
Helix 7	AA7	A	440	448	Right-handed alpha
Helix 8	AA8	A	466	474	Right-handed alpha
Helix 9	AA9	A	508	520	Right-handed alpha
Helix 10	AB1	A	529	533	Right-handed 310
Helix 11	AB2	B	95	109	Right-handed alpha
Helix 12	AB3	B	139	154	Right-handed alpha
Helix 13	AB4	B	166	168	Right-handed 310
Helix 14	AB5	B	208	217	Right-handed alpha
Helix 15	AB6	B	341	345	Right-handed 310
Helix 16	AB7	B	392	400	Right-handed alpha
Helix 17	AB8	B	440	448	Right-handed alpha
Helix 18	AB9	B	466	474	Right-handed alpha
Helix 19	AC1	B	508	520	Right-handed alpha
Helix 20	AC2	B	529	533	Right-handed 310

There are 15 sheets in PDB entry 6OZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	526	first strand
Strand 2	A	480	486	anti-parallel
Strand 3	A	491	496	anti-parallel
Strand 4	A	176	183	anti-parallel
Strand 5	A	70	77	anti-parallel
Strand 6	A	59	67	anti-parallel
Strand 7	B	59	67	anti-parallel
Strand 8	B	70	77	anti-parallel
Strand 9	B	176	183	anti-parallel
Strand 10	B	491	496	anti-parallel
Strand 11	B	480	486	anti-parallel
Strand 12	B	521	526	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	117	first strand
Strand 2	A	130	137	anti-parallel
Strand 3	A	86	93	anti-parallel
Strand 4	A	161	164	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	195	first strand
Strand 2	A	557	561	anti-parallel
Strand 3	A	220	223	anti-parallel
Strand 4	A	535	537	anti-parallel
Strand 5	A	540	541	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	251	254	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	297	first strand
Strand 2	A	273	289	anti-parallel
Strand 3	A	408	416	anti-parallel
Strand 4	A	419	420	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	297	first strand
Strand 2	A	273	289	anti-parallel
Strand 3	A	260	267	anti-parallel
Strand 4	A	428	431	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	300	first strand
Strand 2	A	334	337	parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	359	364	anti-parallel
Strand 5	A	370	374	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	311	first strand
Strand 2	A	322	329	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	117	first strand
Strand 2	B	130	137	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	161	164	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	195	first strand
Strand 2	B	557	561	anti-parallel
Strand 3	B	220	223	anti-parallel
Strand 4	B	535	537	anti-parallel
Strand 5	B	540	541	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	248	first strand
Strand 2	B	251	254	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	273	289	anti-parallel
Strand 3	B	408	416	anti-parallel
Strand 4	B	419	421	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	273	289	anti-parallel
Strand 3	B	260	267	anti-parallel
Strand 4	B	428	431	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	300	first strand
Strand 2	B	334	337	parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	359	364	anti-parallel
Strand 5	B	370	374	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	311	first strand
Strand 2	B	322	329	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OZD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OZD