Analysis of interatomic Contacts of Structural Units in PDB entry:
6OZS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6OZS entry

There are 6 chains in PDB entry 6OZS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6GLY 252
B
 ARG 8LEU 251
c
 C 301 A 304
C
 U 318 U 329
d
 C 301 A 304
D
 U 318 U 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 6OZS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 26Right-handed alpha
Helix 2
AA2
A
34 39Right-handed 310
Helix 3
AA3
A
96 115Right-handed alpha
Helix 4
AA4
A
116 119Right-handed 310
Helix 5
AA5
A
137 147Right-handed alpha
Helix 6
AA6
A
166 176Right-handed alpha
Helix 7
AA7
A
216 228Right-handed alpha
Helix 8
AA8
A
233 250Right-handed alpha
Helix 9
AA9
B
10 26Right-handed alpha
Helix 10
AB1
B
34 39Right-handed 310
Helix 11
AB2
B
95 115Right-handed alpha
Helix 12
AB3
B
116 119Right-handed 310
Helix 13
AB4
B
137 147Right-handed alpha
Helix 14
AB5
B
166 176Right-handed alpha
Helix 15
AB6
B
216 227Right-handed alpha
Helix 16
AB7
B
233 250Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6OZS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 86first strand
Strand 2
A
62 71anti-parallel
Strand 3
A
47 55anti-parallel
Strand 4
A
122 126parallel
Strand 5
A
150 154parallel
Strand 6
A
207 213anti-parallel
Strand 7
A
192 197anti-parallel
Strand 8
A
182 186anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 86first strand
Strand 2
B
62 71anti-parallel
Strand 3
B
47 55anti-parallel
Strand 4
B
122 126parallel
Strand 5
B
150 154parallel
Strand 6
B
207 213anti-parallel
Strand 7
B
192 197anti-parallel
Strand 8
B
182 186anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il