Analysis of interatomic Contacts of Structural Units in PDB entry:
6P0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P0F entry

There is 1 chain in PDB entry 6P0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LYS 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6P0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
31 33Right-handed 310
Helix 3
AA3
A
38 46Right-handed alpha
Helix 4
AA4
A
104 114Right-handed 310
Helix 5
AA5
A
117 121Right-handed 310
Helix 6
AA6
A
137 146Right-handed alpha
Helix 7
AA7
A
159 175Right-handed alpha
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There are 4 sheets in PDB entry 6P0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
91 102anti-parallel
Strand 5
A
132 133anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
91 102anti-parallel
Strand 5
A
70 76anti-parallel
Strand 6
A
5 11parallel
Strand 7
A
155 158anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
63 64anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
83 84anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il