Analysis of interatomic Contacts of Structural Units in PDB entry:
6P1H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P1H entry

There are 5 chains in PDB entry 6P1H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 94	TRP 1097
B	LEU 5	ASP 486
C	SER 6	LYS 116
P	T 19	C 30
T	A 3	A 17

There are 46 helices in PDB entry 6P1H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	171	Right-handed 310
Helix 2	AA2	A	172	187	Right-handed alpha
Helix 3	AA3	A	222	234	Right-handed alpha
Helix 4	AA4	A	253	263	Right-handed alpha
Helix 5	AA5	A	378	394	Right-handed alpha
Helix 6	AA6	A	406	418	Right-handed alpha
Helix 7	AA7	A	463	472	Right-handed alpha
Helix 8	AA8	A	478	486	Right-handed alpha
Helix 9	AA9	A	497	504	Right-handed alpha
Helix 10	AB1	A	506	532	Right-handed alpha
Helix 11	AB2	A	532	544	Right-handed alpha
Helix 12	AB3	A	547	552	Right-handed alpha
Helix 13	AB4	A	556	572	Right-handed alpha
Helix 14	AB5	A	611	620	Right-handed alpha
Helix 15	AB6	A	623	625	Right-handed 310
Helix 16	AB7	A	629	637	Right-handed alpha
Helix 17	AB8	A	661	682	Right-handed alpha
Helix 18	AB9	A	688	692	Right-handed 310
Helix 19	AC1	A	693	698	Right-handed alpha
Helix 20	AC2	A	704	713	Right-handed alpha
Helix 21	AC3	A	734	746	Right-handed alpha
Helix 22	AC4	A	774	791	Right-handed alpha
Helix 23	AC5	A	843	859	Right-handed alpha
Helix 24	AC6	A	862	879	Right-handed alpha
Helix 25	AC7	A	883	887	Right-handed 310
Helix 26	AC8	A	901	915	Right-handed alpha
Helix 27	AC9	A	941	949	Right-handed alpha
Helix 28	AD1	A	953	961	Right-handed alpha
Helix 29	AD2	A	962	975	Right-handed alpha
Helix 30	AD3	A	975	984	Right-handed alpha
Helix 31	AD4	A	1031	1037	Right-handed alpha
Helix 32	AD5	A	1041	1061	Right-handed alpha
Helix 33	AD6	A	1079	1095	Right-handed alpha
Helix 34	AD7	B	6	13	Right-handed alpha
Helix 35	AD8	B	54	73	Right-handed alpha
Helix 36	AD9	B	117	124	Right-handed alpha
Helix 37	AE1	B	160	164	Right-handed 310
Helix 38	AE2	B	228	241	Right-handed alpha
Helix 39	AE3	B	274	291	Right-handed alpha
Helix 40	AE4	B	316	320	Right-handed 310
Helix 41	AE5	B	321	327	Right-handed 310
Helix 42	AE6	B	357	368	Right-handed alpha
Helix 43	AE7	B	393	405	Right-handed alpha
Helix 44	AE8	B	411	416	Right-handed alpha
Helix 45	AE9	C	21	30	Right-handed alpha
Helix 46	AF1	C	32	46	Right-handed alpha

There are 17 sheets in PDB entry 6P1H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	135	143	anti-parallel
Strand 3	A	148	154	anti-parallel
Strand 4	A	293	296	parallel
Strand 5	A	278	279	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	135	143	anti-parallel
Strand 3	A	114	117	anti-parallel
Strand 4	A	269	271	anti-parallel
Strand 5	A	301	302	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	163	first strand
Strand 2	A	211	218	anti-parallel
Strand 3	A	191	201	anti-parallel
Strand 4	A	573	574	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	316	324	anti-parallel
Strand 3	A	339	344	anti-parallel
Strand 4	A	358	361	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	348	first strand
Strand 2	A	316	324	anti-parallel
Strand 3	A	397	399	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	441	first strand
Strand 2	A	449	454	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	600	first strand
Strand 2	A	808	812	anti-parallel
Strand 3	A	815	823	anti-parallel
Strand 4	A	826	833	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	604	609	first strand
Strand 2	A	799	805	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	628	first strand
Strand 2	A	652	654	anti-parallel
Strand 3	A	644	646	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	757	758	first strand
Strand 2	A	768	769	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	889	892	first strand
Strand 2	A	923	926	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	111	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	153	158	anti-parallel
Strand 4	B	184	191	parallel
Strand 5	B	172	177	anti-parallel
Strand 6	B	102	111	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	298	first strand
Strand 2	B	256	259	parallel
Strand 3	B	213	217	parallel
Strand 4	B	469	474	anti-parallel
Strand 5	B	481	484	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	347	first strand
Strand 2	B	350	355	anti-parallel
Strand 3	B	435	441	parallel
Strand 4	B	458	462	parallel
Strand 5	B	445	447	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	454	455	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	56	first strand
Strand 2	C	85	88	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	58	60	anti-parallel
Strand 3	C	80	82	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P1H

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P1H