Analysis of interatomic Contacts of Structural Units in PDB entry:
6P1J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P1J entry

There are 2 chains in PDB entry 6P1J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 44	LEU 1005
B	ALA 44	ASP 370

There are 74 helices in PDB entry 6P1J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	63	Right-handed alpha
Helix 2	AA2	A	67	69	Right-handed 310
Helix 3	AA3	A	83	98	Right-handed alpha
Helix 4	AA4	A	99	101	Right-handed 310
Helix 5	AA5	A	132	146	Right-handed alpha
Helix 6	AA6	A	180	199	Right-handed alpha
Helix 7	AA7	A	216	229	Right-handed alpha
Helix 8	AA8	A	230	244	Right-handed alpha
Helix 9	AA9	A	275	290	Right-handed alpha
Helix 10	AB1	A	292	310	Right-handed alpha
Helix 11	AB2	A	325	331	Right-handed 310
Helix 12	AB3	A	350	367	Right-handed alpha
Helix 13	AB4	A	372	380	Right-handed alpha
Helix 14	AB5	A	452	473	Right-handed alpha
Helix 15	AB6	A	477	481	Right-handed 310
Helix 16	AB7	A	485	494	Right-handed alpha
Helix 17	AB8	A	495	498	Right-handed 310
Helix 18	AB9	A	508	520	Right-handed alpha
Helix 19	AC1	A	535	552	Right-handed alpha
Helix 20	AC2	A	567	581	Right-handed alpha
Helix 21	AC3	A	592	604	Right-handed alpha
Helix 22	AC4	A	629	631	Right-handed 310
Helix 23	AC5	A	632	637	Right-handed alpha
Helix 24	AC6	A	644	649	Right-handed alpha
Helix 25	AC7	A	675	690	Right-handed alpha
Helix 26	AC8	A	707	717	Right-handed alpha
Helix 27	AC9	A	727	731	Right-handed 310
Helix 28	AD1	A	734	744	Right-handed alpha
Helix 29	AD2	A	751	760	Right-handed alpha
Helix 30	AD3	A	763	767	Right-handed 310
Helix 31	AD4	A	781	792	Right-handed alpha
Helix 32	AD5	A	803	807	Right-handed 310
Helix 33	AD6	A	867	874	Right-handed alpha
Helix 34	AD7	A	921	932	Right-handed alpha
Helix 35	AD8	A	965	977	Right-handed alpha
Helix 36	AD9	A	978	982	Right-handed 310
Helix 37	AE1	A	1001	1005	Right-handed 310
Helix 38	AE2	B	50	61	Right-handed alpha
Helix 39	AE3	B	67	69	Right-handed 310
Helix 40	AE4	B	83	98	Right-handed alpha
Helix 41	AE5	B	99	101	Right-handed 310
Helix 42	AE6	B	132	146	Right-handed alpha
Helix 43	AE7	B	177	179	Right-handed 310
Helix 44	AE8	B	180	200	Right-handed alpha
Helix 45	AE9	B	216	229	Right-handed alpha
Helix 46	AF1	B	230	244	Right-handed alpha
Helix 47	AF2	B	275	290	Right-handed alpha
Helix 48	AF3	B	292	310	Right-handed alpha
Helix 49	AF4	B	325	329	Right-handed 310
Helix 50	AF5	B	350	367	Right-handed alpha
Helix 51	AF6	B	372	380	Right-handed alpha
Helix 52	AF7	B	452	473	Right-handed alpha
Helix 53	AF8	B	485	494	Right-handed alpha
Helix 54	AF9	B	495	498	Right-handed 310
Helix 55	AG1	B	508	520	Right-handed alpha
Helix 56	AG2	B	535	552	Right-handed alpha
Helix 57	AG3	B	567	581	Right-handed alpha
Helix 58	AG4	B	592	604	Right-handed alpha
Helix 59	AG5	B	629	631	Right-handed 310
Helix 60	AG6	B	632	637	Right-handed alpha
Helix 61	AG7	B	644	649	Right-handed alpha
Helix 62	AG8	B	675	690	Right-handed alpha
Helix 63	AG9	B	707	717	Right-handed alpha
Helix 64	AH1	B	727	731	Right-handed 310
Helix 65	AH2	B	734	744	Right-handed alpha
Helix 66	AH3	B	751	760	Right-handed alpha
Helix 67	AH4	B	763	767	Right-handed 310
Helix 68	AH5	B	781	792	Right-handed alpha
Helix 69	AH6	B	803	807	Right-handed 310
Helix 70	AH7	B	867	874	Right-handed alpha
Helix 71	AH8	B	921	931	Right-handed alpha
Helix 72	AH9	B	965	977	Right-handed alpha
Helix 73	AI1	B	978	982	Right-handed 310
Helix 74	AI2	B	1001	1005	Right-handed 310

There are 22 sheets in PDB entry 6P1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	103	108	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	128	first strand
Strand 2	A	156	164	parallel
Strand 3	A	167	175	anti-parallel
Strand 4	A	71	79	anti-parallel
Strand 5	A	412	415	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	344	first strand
Strand 2	A	313	320	anti-parallel
Strand 3	A	394	399	parallel
Strand 4	A	428	434	parallel
Strand 5	A	440	447	anti-parallel
Strand 6	A	266	274	anti-parallel
Strand 7	A	422	423	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	534	first strand
Strand 2	A	524	528	anti-parallel
Strand 3	A	721	724	parallel
Strand 4	A	696	699	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	559	563	parallel
Strand 3	A	607	610	parallel
Strand 4	A	623	626	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	660	first strand
Strand 2	A	670	674	anti-parallel
Strand 3	A	863	864	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	750	first strand
Strand 2	A	772	775	parallel
Strand 3	A	796	801	parallel
Strand 4	A	811	814	anti-parallel
Strand 5	A	828	829	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	833	838	first strand
Strand 2	A	851	857	anti-parallel
Strand 3	A	887	897	anti-parallel
Strand 4	A	875	877	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	833	838	first strand
Strand 2	A	851	857	anti-parallel
Strand 3	A	887	897	anti-parallel
Strand 4	A	903	908	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	915	first strand
Strand 2	A	918	920	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	943	first strand
Strand 2	A	951	958	anti-parallel
Strand 3	A	985	989	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	103	108	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	156	164	parallel
Strand 3	B	167	175	anti-parallel
Strand 4	B	71	79	anti-parallel
Strand 5	B	412	415	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	344	first strand
Strand 2	B	313	320	anti-parallel
Strand 3	B	394	399	parallel
Strand 4	B	428	434	parallel
Strand 5	B	440	447	anti-parallel
Strand 6	B	266	274	anti-parallel
Strand 7	B	422	423	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	534	first strand
Strand 2	B	524	528	anti-parallel
Strand 3	B	721	724	parallel
Strand 4	B	696	699	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	583	586	first strand
Strand 2	B	559	563	parallel
Strand 3	B	607	610	parallel
Strand 4	B	623	626	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	660	first strand
Strand 2	B	670	674	anti-parallel
Strand 3	B	863	864	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	750	first strand
Strand 2	B	772	775	parallel
Strand 3	B	796	801	parallel
Strand 4	B	811	814	anti-parallel
Strand 5	B	828	829	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	838	first strand
Strand 2	B	851	857	anti-parallel
Strand 3	B	887	897	anti-parallel
Strand 4	B	875	877	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	838	first strand
Strand 2	B	851	857	anti-parallel
Strand 3	B	887	897	anti-parallel
Strand 4	B	903	908	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	915	first strand
Strand 2	B	918	920	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	943	first strand
Strand 2	B	951	958	anti-parallel
Strand 3	B	985	989	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P1J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P1J