Analysis of interatomic Contacts of Structural Units in PDB entry:
6P22


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P22 entry

There are 4 chains in PDB entry 6P22 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 483GLN 576
B
 SER 483GLN 576
C
 SER 483GLN 576
D
 SER 2GLY 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 2 helices in PDB entry 6P22. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
49 53Right-handed 310
Helix 2
AA2
D
78 80Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6P22. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 490first strand
Strand 2
B
494 498parallel
Strand 3
C
502 506parallel
Strand 4
A
510 514parallel
Strand 5
B
518 522parallel
Strand 6
C
526 530parallel
Strand 7
A
534 538parallel
Strand 8
B
542 546parallel
Strand 9
C
549 554parallel
Strand 10
A
556 561parallel
Strand 11
B
564 568parallel
Strand 12
C
571 575parallel
Strand 13
D
82 87parallel
Strand 14
D
91 93anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
486 490first strand
Strand 2
A
494 498parallel
Strand 3
B
502 506parallel
Strand 4
C
510 514parallel
Strand 5
A
518 522parallel
Strand 6
B
526 530parallel
Strand 7
C
534 538parallel
Strand 8
A
542 546parallel
Strand 9
B
549 554parallel
Strand 10
C
556 561parallel
Strand 11
A
564 568parallel
Strand 12
B
571 575parallel
Strand 13
D
38 39parallel
Strand 14
D
42 43anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 490first strand
Strand 2
C
494 498parallel
Strand 3
A
502 506parallel
Strand 4
B
510 514parallel
Strand 5
C
518 522parallel
Strand 6
A
526 530parallel
Strand 7
B
534 538parallel
Strand 8
C
542 546parallel
Strand 9
A
549 554parallel
Strand 10
B
556 561parallel
Strand 11
C
564 568parallel
Strand 12
A
571 575parallel
Strand 13
D
135 137parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 14first strand
Strand 2
D
122 129anti-parallel
Strand 3
D
99 107anti-parallel
Strand 4
D
64 76anti-parallel
Strand 5
D
55 61anti-parallel
Strand 6
D
21 25anti-parallel
Strand 7
D
17 18anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il