Analysis of interatomic Contacts of Structural Units in PDB entry:
6P25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P25 entry

There are 3 chains in PDB entry 6P25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 15ARG 749
B
 SER 57ALA 754
D
 PRO 1THR 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6P25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 42Right-handed alpha
Helix 2
AA2
A
46 64Right-handed alpha
Helix 3
AA3
A
77 91Right-handed alpha
Helix 4
AA4
A
100 113Right-handed alpha
Helix 5
AA5
A
134 159Right-handed alpha
Helix 6
AA6
A
162 175Right-handed alpha
Helix 7
AA7
A
176 185Right-handed alpha
Helix 8
AA8
A
188 208Right-handed alpha
Helix 9
AA9
A
213 232Right-handed alpha
Helix 10
AB1
A
236 258Right-handed alpha
Helix 11
AB2
A
262 296Right-handed alpha
Helix 12
AB3
A
310 314Right-handed 310
Helix 13
AB4
A
368 371Right-handed 310
Helix 14
AB5
A
438 441Right-handed 310
Helix 15
AB6
A
455 460Right-handed alpha
Helix 16
AB7
A
504 507Right-handed 310
Helix 17
AB8
A
532 550Right-handed alpha
Helix 18
AB9
A
560 567Right-handed 310
Helix 19
AC1
A
586 614Right-handed alpha
Helix 20
AC2
A
620 640Right-handed alpha
Helix 21
AC3
A
641 645Right-handed 310
Helix 22
AC4
A
652 655Right-handed 310
Helix 23
AC5
A
656 677Right-handed alpha
Helix 24
AC6
A
682 704Right-handed alpha
Helix 25
AC7
A
705 708Right-handed 310
Helix 26
AC8
A
714 722Right-handed alpha
Helix 27
AC9
A
738 743Right-handed alpha
Helix 28
AD1
B
58 80Right-handed alpha
Helix 29
AD2
B
82 86Right-handed 310
Helix 30
AD3
B
92 105Right-handed alpha
Helix 31
AD4
B
115 127Right-handed alpha
Helix 32
AD5
B
147 173Right-handed alpha
Helix 33
AD6
B
177 189Right-handed alpha
Helix 34
AD7
B
190 197Right-handed alpha
Helix 35
AD8
B
202 222Right-handed alpha
Helix 36
AD9
B
229 250Right-handed alpha
Helix 37
AE1
B
253 272Right-handed alpha
Helix 38
AE2
B
278 294Right-handed alpha
Helix 39
AE3
B
294 312Right-handed alpha
Helix 40
AE4
B
318 322Right-handed 310
Helix 41
AE5
B
323 330Right-handed alpha
Helix 42
AE6
B
384 387Right-handed 310
Helix 43
AE7
B
453 456Right-handed 310
Helix 44
AE8
B
500 504Right-handed 310
Helix 45
AE9
B
547 565Right-handed alpha
Helix 46
AF1
B
579 583Right-handed 310
Helix 47
AF2
B
609 634Right-handed alpha
Helix 48
AF3
B
641 652Right-handed alpha
Helix 49
AF4
B
652 669Right-handed alpha
Helix 50
AF5
B
674 676Right-handed 310
Helix 51
AF6
B
677 695Right-handed alpha
Helix 52
AF7
B
698 702Right-handed 310
Helix 53
AF8
B
703 728Right-handed alpha
Helix 54
AF9
B
729 734Right-handed alpha
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There are 11 sheets in PDB entry 6P25. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
28 30anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
525 526anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 337first strand
Strand 2
A
373 377anti-parallel
Strand 3
A
395 401anti-parallel
Strand 4
A
443 447anti-parallel
Strand 5
A
468 472anti-parallel
Strand 6
A
509 515anti-parallel
Strand 7
A
332 337anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 351first strand
Strand 2
A
359 363anti-parallel
Strand 3
A
493 498anti-parallel
Strand 4
A
425 426anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
345 351first strand
Strand 2
A
359 363anti-parallel
Strand 3
A
493 498anti-parallel
Strand 4
A
480 486anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 576first strand
Strand 2
A
579 583anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 353first strand
Strand 2
B
524 530anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
360 367first strand
Strand 2
B
375 380anti-parallel
Strand 3
B
441 446anti-parallel
Strand 4
B
426 433anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 392first strand
Strand 2
B
415 420anti-parallel
Strand 3
B
458 465anti-parallel
Strand 4
B
479 485anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 498first strand
Strand 2
B
507 512anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 591first strand
Strand 2
B
603 604anti-parallel
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