Analysis of interatomic Contacts of Structural Units in PDB entry:
6P2A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P2A entry

There are 5 chains in PDB entry 6P2A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 483	ALA 627
B	SER 483	ALA 627
C	GLY 482	ALA 627
D	SER 483	ALA 627
E	SER 483	VAL 542

There are 6 helices in PDB entry 6P2A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	608	610	Right-handed 310
Helix 2	AA2	B	608	610	Right-handed 310
Helix 3	AA3	C	608	610	Right-handed 310
Helix 4	AA4	D	608	610	Right-handed 310
Helix 5	AA5	E	608	610	Right-handed 310
Helix 6	AA6	F	608	610	Right-handed 310

There are 16 sheets in PDB entry 6P2A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	490	first strand
Strand 2	B	494	498	parallel
Strand 3	C	502	506	parallel
Strand 4	A	510	514	parallel
Strand 5	B	518	522	parallel
Strand 6	C	526	530	parallel
Strand 7	A	534	538	parallel
Strand 8	B	542	546	parallel
Strand 9	C	549	566	parallel
Strand 10	B	549	560	parallel
Strand 11	A	542	546	parallel
Strand 12	C	534	538	parallel
Strand 13	B	526	530	parallel
Strand 14	A	518	522	parallel
Strand 15	C	510	514	parallel
Strand 16	B	502	506	parallel
Strand 17	A	494	498	parallel
Strand 18	C	486	490	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	566	first strand
Strand 2	B	549	560	parallel
Strand 3	A	549	553	parallel
Strand 4	C	542	546	parallel
Strand 5	B	534	538	parallel
Strand 6	A	526	530	parallel
Strand 7	C	518	522	parallel
Strand 8	B	510	514	parallel
Strand 9	A	502	506	parallel
Strand 10	C	494	498	parallel
Strand 11	B	486	490	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	566	first strand
Strand 2	A	556	566	parallel
Strand 3	B	563	566	parallel
Strand 4	C	569	572	parallel
Strand 5	A	575	578	parallel
Strand 6	B	581	584	parallel
Strand 7	C	587	590	parallel
Strand 8	A	594	596	parallel
Strand 9	B	600	602	parallel
Strand 10	B	605	606	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	566	first strand
Strand 2	A	556	566	parallel
Strand 3	B	569	572	parallel
Strand 4	C	575	578	parallel
Strand 5	A	581	584	parallel
Strand 6	B	587	590	parallel
Strand 7	C	594	596	parallel
Strand 8	A	600	602	parallel
Strand 9	A	605	606	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	549	566	first strand
Strand 2	A	569	572	parallel
Strand 3	B	575	578	parallel
Strand 4	C	581	584	parallel
Strand 5	A	587	590	parallel
Strand 6	B	594	596	parallel
Strand 7	C	600	602	parallel
Strand 8	C	605	606	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	612	first strand
Strand 2	B	625	626	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	625	626	first strand
Strand 2	C	611	612	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	612	first strand
Strand 2	C	625	626	anti-parallel

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There are 18 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	490	first strand
Strand 2	E	494	498	parallel
Strand 3	F	502	506	parallel
Strand 4	D	510	514	parallel
Strand 5	E	518	522	parallel
Strand 6	F	526	530	parallel
Strand 7	D	534	538	parallel
Strand 8	E	542	546	parallel
Strand 9	F	549	566	parallel
Strand 10	E	549	566	parallel
Strand 11	D	542	546	parallel
Strand 12	F	534	538	parallel
Strand 13	E	526	530	parallel
Strand 14	D	518	522	parallel
Strand 15	F	510	514	parallel
Strand 16	E	502	506	parallel
Strand 17	D	494	498	parallel
Strand 18	F	486	490	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	549	566	first strand
Strand 2	E	549	566	parallel
Strand 3	F	569	572	parallel
Strand 4	D	575	578	parallel
Strand 5	E	581	584	parallel
Strand 6	F	587	590	parallel
Strand 7	D	594	596	parallel
Strand 8	E	600	602	parallel
Strand 9	E	605	606	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	549	566	first strand
Strand 2	D	549	566	parallel
Strand 3	E	569	572	parallel
Strand 4	F	575	578	parallel
Strand 5	D	581	584	parallel
Strand 6	E	587	590	parallel
Strand 7	F	594	596	parallel
Strand 8	D	600	602	parallel
Strand 9	D	605	606	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	549	566	first strand
Strand 2	D	549	566	parallel
Strand 3	F	542	546	parallel
Strand 4	E	534	538	parallel
Strand 5	D	526	530	parallel
Strand 6	F	518	522	parallel
Strand 7	E	510	514	parallel
Strand 8	D	502	506	parallel
Strand 9	F	494	498	parallel
Strand 10	E	486	490	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	549	566	first strand
Strand 2	D	569	572	parallel
Strand 3	E	575	578	parallel
Strand 4	F	581	584	parallel
Strand 5	D	587	590	parallel
Strand 6	E	594	596	parallel
Strand 7	F	600	602	parallel
Strand 8	F	605	606	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	E	625	626	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	625	626	first strand
Strand 2	F	611	612	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	611	612	first strand
Strand 2	F	625	626	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P2A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P2A