Analysis of interatomic Contacts of Structural Units in PDB entry:
6P2I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P2I entry

There are 2 chains in PDB entry 6P2I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 307
B
 MET 1LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6P2I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
34 44Right-handed alpha
Helix 3
AA3
A
56 61Right-handed alpha
Helix 4
AA4
A
80 87Right-handed alpha
Helix 5
AA5
A
98 115Right-handed alpha
Helix 6
AA6
A
116 126Right-handed alpha
Helix 7
AA7
A
132 136Right-handed 310
Helix 8
AA8
A
151 164Right-handed alpha
Helix 9
AA9
A
185 193Right-handed alpha
Helix 10
AB1
A
211 216Right-handed alpha
Helix 11
AB2
A
229 233Right-handed 310
Helix 12
AB3
A
234 244Right-handed alpha
Helix 13
AB4
A
261 266Right-handed 310
Helix 14
AB5
A
279 299Right-handed alpha
Helix 15
AB6
B
13 24Right-handed alpha
Helix 16
AB7
B
34 44Right-handed alpha
Helix 17
AB8
B
56 61Right-handed alpha
Helix 18
AB9
B
80 87Right-handed alpha
Helix 19
AC1
B
98 115Right-handed alpha
Helix 20
AC2
B
116 126Right-handed alpha
Helix 21
AC3
B
132 136Right-handed 310
Helix 22
AC4
B
151 164Right-handed alpha
Helix 23
AC5
B
185 193Right-handed alpha
Helix 24
AC6
B
211 216Right-handed alpha
Helix 25
AC7
B
229 233Right-handed 310
Helix 26
AC8
B
234 244Right-handed alpha
Helix 27
AC9
B
261 266Right-handed 310
Helix 28
AD1
B
279 299Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6P2I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
2 5parallel
Strand 3
A
47 50parallel
Strand 4
A
68 71parallel
Strand 5
A
90 92parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 183first strand
Strand 2
A
167 171parallel
Strand 3
A
144 148parallel
Strand 4
A
195 198parallel
Strand 5
A
223 226parallel
Strand 6
A
249 252parallel
Strand 7
A
269 271parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
B
2 5parallel
Strand 3
B
47 50parallel
Strand 4
B
68 71parallel
Strand 5
B
90 92parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
167 171parallel
Strand 3
B
144 148parallel
Strand 4
B
195 198parallel
Strand 5
B
223 226parallel
Strand 6
B
249 252parallel
Strand 7
B
269 271parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il