Analysis of interatomic Contacts of Structural Units in PDB entry:
6P2R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P2R entry

There are 2 chains in PDB entry 6P2R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	ARG 749
B	SER 57	ALA 754

There are 54 helices in PDB entry 6P2R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	42	Right-handed alpha
Helix 2	AA2	A	46	64	Right-handed alpha
Helix 3	AA3	A	77	91	Right-handed alpha
Helix 4	AA4	A	100	113	Right-handed alpha
Helix 5	AA5	A	134	160	Right-handed alpha
Helix 6	AA6	A	162	175	Right-handed alpha
Helix 7	AA7	A	176	185	Right-handed alpha
Helix 8	AA8	A	188	208	Right-handed alpha
Helix 9	AA9	A	213	232	Right-handed alpha
Helix 10	AB1	A	236	258	Right-handed alpha
Helix 11	AB2	A	262	296	Right-handed alpha
Helix 12	AB3	A	300	305	Right-handed 310
Helix 13	AB4	A	438	441	Right-handed 310
Helix 14	AB5	A	504	507	Right-handed 310
Helix 15	AB6	A	532	550	Right-handed alpha
Helix 16	AB7	A	560	564	Right-handed 310
Helix 17	AB8	A	586	613	Right-handed alpha
Helix 18	AB9	A	620	640	Right-handed alpha
Helix 19	AC1	A	641	645	Right-handed 310
Helix 20	AC2	A	652	655	Right-handed 310
Helix 21	AC3	A	656	677	Right-handed alpha
Helix 22	AC4	A	682	704	Right-handed alpha
Helix 23	AC5	A	705	708	Right-handed 310
Helix 24	AC6	A	714	722	Right-handed alpha
Helix 25	AC7	A	737	742	Right-handed 310
Helix 26	AC8	B	58	80	Right-handed alpha
Helix 27	AC9	B	82	86	Right-handed 310
Helix 28	AD1	B	92	105	Right-handed alpha
Helix 29	AD2	B	114	127	Right-handed alpha
Helix 30	AD3	B	147	173	Right-handed alpha
Helix 31	AD4	B	177	189	Right-handed alpha
Helix 32	AD5	B	190	197	Right-handed alpha
Helix 33	AD6	B	202	222	Right-handed alpha
Helix 34	AD7	B	229	250	Right-handed alpha
Helix 35	AD8	B	253	273	Right-handed alpha
Helix 36	AD9	B	278	294	Right-handed alpha
Helix 37	AE1	B	294	312	Right-handed alpha
Helix 38	AE2	B	318	322	Right-handed 310
Helix 39	AE3	B	323	330	Right-handed alpha
Helix 40	AE4	B	384	387	Right-handed 310
Helix 41	AE5	B	453	456	Right-handed 310
Helix 42	AE6	B	500	504	Right-handed 310
Helix 43	AE7	B	547	565	Right-handed alpha
Helix 44	AE8	B	579	583	Right-handed 310
Helix 45	AE9	B	610	623	Right-handed alpha
Helix 46	AF1	B	624	634	Right-handed alpha
Helix 47	AF2	B	641	652	Right-handed alpha
Helix 48	AF3	B	652	669	Right-handed alpha
Helix 49	AF4	B	674	677	Right-handed 310
Helix 50	AF5	B	678	695	Right-handed alpha
Helix 51	AF6	B	696	702	Right-handed 310
Helix 52	AF7	B	703	728	Right-handed alpha
Helix 53	AF8	B	729	734	Right-handed alpha
Helix 54	AF9	B	740	744	Right-handed 310

There are 12 sheets in PDB entry 6P2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	28	30	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	324	first strand
Strand 2	A	525	526	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	337	first strand
Strand 2	A	373	377	anti-parallel
Strand 3	A	396	401	anti-parallel
Strand 4	A	443	447	anti-parallel
Strand 5	A	468	472	anti-parallel
Strand 6	A	509	515	anti-parallel
Strand 7	A	332	337	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	351	first strand
Strand 2	A	359	363	anti-parallel
Strand 3	A	493	499	anti-parallel
Strand 4	A	425	426	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	351	first strand
Strand 2	A	359	363	anti-parallel
Strand 3	A	493	499	anti-parallel
Strand 4	A	478	486	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	576	first strand
Strand 2	A	579	583	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	353	first strand
Strand 2	B	524	530	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	362	first strand
Strand 2	B	378	380	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	376	first strand
Strand 2	B	441	446	anti-parallel
Strand 3	B	426	433	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	376	first strand
Strand 2	B	441	446	anti-parallel
Strand 3	B	510	512	anti-parallel
Strand 4	B	491	492	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	392	first strand
Strand 2	B	417	420	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	465	first strand
Strand 2	B	479	485	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P2R

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P2R