Analysis of interatomic Contacts of Structural Units in PDB entry:
6P3Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P3Q entry

There are 2 chains in PDB entry 6P3Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 4PHE 349
B
 VAL 5PHE 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6P3Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
12 24Right-handed alpha
Helix 3
AA3
A
53 58Right-handed alpha
Helix 4
AA4
A
80 93Right-handed alpha
Helix 5
AA5
A
93 101Right-handed alpha
Helix 6
AA6
A
103 108Right-handed alpha
Helix 7
AA7
A
113 117Right-handed 310
Helix 8
AA8
A
158 172Right-handed alpha
Helix 9
AA9
A
173 180Right-handed 310
Helix 10
AB1
A
181 191Right-handed alpha
Helix 11
AB2
A
199 203Right-handed alpha
Helix 12
AB3
A
204 207Right-handed 310
Helix 13
AB4
A
208 224Right-handed alpha
Helix 14
AB5
A
236 240Right-handed 310
Helix 15
AB6
A
268 273Right-handed alpha
Helix 16
AB7
A
299 304Right-handed alpha
Helix 17
AB8
A
306 314Right-handed alpha
Helix 18
AB9
A
327 334Right-handed alpha
Helix 19
AC1
A
343 349Right-handed alpha
Helix 20
AC2
B
9 11Right-handed 310
Helix 21
AC3
B
12 24Right-handed alpha
Helix 22
AC4
B
53 58Right-handed alpha
Helix 23
AC5
B
80 93Right-handed alpha
Helix 24
AC6
B
93 101Right-handed alpha
Helix 25
AC7
B
103 108Right-handed alpha
Helix 26
AC8
B
113 117Right-handed 310
Helix 27
AC9
B
158 172Right-handed alpha
Helix 28
AD1
B
173 180Right-handed 310
Helix 29
AD2
B
181 191Right-handed alpha
Helix 30
AD3
B
207 224Right-handed alpha
Helix 31
AD4
B
265 267Right-handed 310
Helix 32
AD5
B
268 273Right-handed alpha
Helix 33
AD6
B
306 314Right-handed alpha
Helix 34
AD7
B
327 334Right-handed alpha
Helix 35
AD8
B
343 349Right-handed alpha
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There are 7 sheets in PDB entry 6P3Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
130 137parallel
Strand 3
A
120 127anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
151 152anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 198first strand
Strand 2
A
336 341anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
253 263anti-parallel
Strand 5
A
276 283anti-parallel
Strand 6
A
322 326anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
130 137parallel
Strand 3
B
120 127anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
140 142anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
151 152anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 198first strand
Strand 2
B
336 341anti-parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
253 263anti-parallel
Strand 5
B
276 283anti-parallel
Strand 6
B
322 326anti-parallel
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