Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P4F entry

There are 4 chains in PDB entry 6P4F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	SER 434
B	MET 0	GLU 372
C	GLY 0	ARG 435
D	MET 0	ARG 70

There are 61 helices in PDB entry 6P4F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	45	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	95	108	Right-handed alpha
Helix 4	AA4	A	117	132	Right-handed alpha
Helix 5	AA5	A	154	160	Right-handed alpha
Helix 6	AA6	A	175	179	Right-handed 310
Helix 7	AA7	A	181	191	Right-handed alpha
Helix 8	AA8	A	212	217	Right-handed alpha
Helix 9	AA9	A	247	269	Right-handed alpha
Helix 10	AB1	A	278	286	Right-handed alpha
Helix 11	AB2	A	288	307	Right-handed alpha
Helix 12	AB3	A	309	322	Right-handed alpha
Helix 13	AB4	A	333	345	Right-handed alpha
Helix 14	AB5	A	354	368	Right-handed alpha
Helix 15	AB6	B	3	7	Right-handed 310
Helix 16	AB7	B	22	24	Right-handed 310
Helix 17	AB8	B	25	36	Right-handed alpha
Helix 18	AB9	B	41	49	Right-handed alpha
Helix 19	AC1	B	49	56	Right-handed alpha
Helix 20	AC2	B	57	72	Right-handed alpha
Helix 21	AC3	B	83	90	Right-handed alpha
Helix 22	AC4	B	97	112	Right-handed alpha
Helix 23	AC5	B	137	155	Right-handed alpha
Helix 24	AC6	B	168	177	Right-handed alpha
Helix 25	AC7	B	196	199	Right-handed 310
Helix 26	AC8	B	202	219	Right-handed alpha
Helix 27	AC9	B	261	273	Right-handed alpha
Helix 28	AD1	B	316	328	Right-handed alpha
Helix 29	AD2	B	360	371	Right-handed alpha
Helix 30	AD3	C	35	46	Right-handed alpha
Helix 31	AD4	C	70	82	Right-handed alpha
Helix 32	AD5	C	95	108	Right-handed alpha
Helix 33	AD6	C	117	132	Right-handed alpha
Helix 34	AD7	C	154	160	Right-handed alpha
Helix 35	AD8	C	175	179	Right-handed 310
Helix 36	AD9	C	181	191	Right-handed alpha
Helix 37	AE1	C	208	211	Right-handed 310
Helix 38	AE2	C	212	217	Right-handed alpha
Helix 39	AE3	C	247	269	Right-handed alpha
Helix 40	AE4	C	278	286	Right-handed alpha
Helix 41	AE5	C	288	307	Right-handed alpha
Helix 42	AE6	C	309	322	Right-handed alpha
Helix 43	AE7	C	333	345	Right-handed alpha
Helix 44	AE8	C	354	368	Right-handed alpha
Helix 45	AE9	C	400	406	Right-handed alpha
Helix 46	AF1	D	3	7	Right-handed 310
Helix 47	AF2	D	22	24	Right-handed 310
Helix 48	AF3	D	25	36	Right-handed alpha
Helix 49	AF4	D	41	49	Right-handed alpha
Helix 50	AF5	D	49	56	Right-handed alpha
Helix 51	AF6	D	57	72	Right-handed alpha
Helix 52	AF7	D	83	90	Right-handed alpha
Helix 53	AF8	D	91	93	Right-handed 310
Helix 54	AF9	D	97	112	Right-handed alpha
Helix 55	AG1	D	137	155	Right-handed alpha
Helix 56	AG2	D	168	177	Right-handed alpha
Helix 57	AG3	D	196	199	Right-handed 310
Helix 58	AG4	D	202	218	Right-handed alpha
Helix 59	AG5	D	261	272	Right-handed alpha
Helix 60	AG6	D	316	328	Right-handed alpha
Helix 61	AG7	D	360	369	Right-handed alpha

There are 14 sheets in PDB entry 6P4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	10	13	anti-parallel
Strand 3	A	3	7	anti-parallel
Strand 4	A	51	52	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	137	140	anti-parallel
Strand 3	A	150	153	parallel
Strand 4	A	111	115	parallel
Strand 5	A	170	173	parallel
Strand 6	A	195	200	parallel
Strand 7	A	85	89	parallel
Strand 8	A	220	223	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	244	first strand
Strand 2	A	420	425	parallel
Strand 3	A	390	393	parallel
Strand 4	A	327	330	parallel
Strand 5	A	372	375	parallel
Strand 6	A	348	349	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	16	18	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	129	132	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	243	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	190	194	anti-parallel
Strand 5	B	182	185	anti-parallel
Strand 6	B	292	294	anti-parallel
Strand 7	B	287	289	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	306	311	anti-parallel
Strand 3	B	334	338	parallel
Strand 4	B	352	354	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	32	first strand
Strand 2	C	10	13	anti-parallel
Strand 3	C	3	7	anti-parallel
Strand 4	C	51	53	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	149	153	parallel
Strand 4	C	111	115	parallel
Strand 5	C	170	173	parallel
Strand 6	C	195	200	parallel
Strand 7	C	85	89	parallel
Strand 8	C	220	223	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	244	first strand
Strand 2	C	420	425	parallel
Strand 3	C	390	393	parallel
Strand 4	C	327	330	parallel
Strand 5	C	372	375	parallel
Strand 6	C	348	349	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	11	first strand
Strand 2	D	16	18	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	130	132	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	243	first strand
Strand 2	D	224	231	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	190	194	anti-parallel
Strand 5	D	182	185	anti-parallel
Strand 6	D	292	294	anti-parallel
Strand 7	D	287	289	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	306	312	anti-parallel
Strand 3	D	334	339	parallel
Strand 4	D	352	355	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P4F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4F