Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P4J entry

There are 3 chains in PDB entry 6P4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 19	SER 532
B	SER 17	SER 529
C	ALA 29	VAL 530

There are 11 helices in PDB entry 6P4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	96	Right-handed alpha
Helix 2	AA2	A	137	142	Right-handed alpha
Helix 3	AA3	A	236	240	Right-handed 310
Helix 4	AA4	B	85	89	Right-handed 310
Helix 5	AA5	B	91	96	Right-handed alpha
Helix 6	AA6	B	454	463	Right-handed alpha
Helix 7	AA7	C	37	42	Right-handed alpha
Helix 8	AA8	C	89	96	Right-handed alpha
Helix 9	AA9	C	137	142	Right-handed alpha
Helix 10	AB1	C	236	240	Right-handed 310
Helix 11	AB2	C	454	465	Right-handed alpha

There are 27 sheets in PDB entry 6P4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	69	first strand
Strand 2	A	201	209	anti-parallel
Strand 3	A	106	113	anti-parallel
Strand 4	A	157	158	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	180	191	anti-parallel
Strand 3	A	118	125	anti-parallel
Strand 4	A	146	150	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	101	103	anti-parallel
Strand 3	A	214	215	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	449	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	251	254	anti-parallel
Strand 4	A	507	508	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	304	309	anti-parallel
Strand 3	A	373	376	anti-parallel
Strand 4	A	367	368	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	304	309	anti-parallel
Strand 3	A	290	292	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	332	343	anti-parallel
Strand 3	A	386	387	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	332	343	anti-parallel
Strand 3	A	394	402	anti-parallel
Strand 4	A	438	439	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	497	499	anti-parallel
Strand 3	A	490	492	anti-parallel
Strand 4	A	472	479	anti-parallel
Strand 5	A	485	487	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	497	499	anti-parallel
Strand 3	A	490	492	anti-parallel
Strand 4	A	472	479	anti-parallel
Strand 5	A	513	521	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	69	first strand
Strand 2	B	201	209	anti-parallel
Strand 3	B	106	108	anti-parallel
Strand 4	B	159	161	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	182	185	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	146	150	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	214	215	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	190	191	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	427	435	anti-parallel
Strand 3	B	252	254	anti-parallel
Strand 4	B	507	508	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	427	435	anti-parallel
Strand 3	B	497	500	anti-parallel
Strand 4	B	485	492	anti-parallel
Strand 5	B	472	478	anti-parallel
Strand 6	B	514	521	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	303	306	anti-parallel
Strand 3	B	375	377	anti-parallel
Strand 4	B	350	358	anti-parallel
Strand 5	B	332	343	anti-parallel
Strand 6	B	390	402	anti-parallel
Strand 7	B	289	292	anti-parallel
Strand 8	B	309	310	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	297	first strand
Strand 2	B	303	306	anti-parallel
Strand 3	B	375	377	anti-parallel
Strand 4	B	350	358	anti-parallel
Strand 5	B	332	343	anti-parallel
Strand 6	B	386	387	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	69	first strand
Strand 2	C	201	209	anti-parallel
Strand 3	C	106	112	anti-parallel
Strand 4	C	157	161	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	180	187	anti-parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	146	150	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	101	103	anti-parallel
Strand 3	C	214	215	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	428	434	anti-parallel
Strand 3	C	449	451	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	254	first strand
Strand 2	C	428	434	anti-parallel
Strand 3	C	496	499	anti-parallel
Strand 4	C	490	492	anti-parallel
Strand 5	C	472	478	anti-parallel
Strand 6	C	514	521	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	302	310	anti-parallel
Strand 3	C	373	379	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	302	310	anti-parallel
Strand 3	C	290	292	anti-parallel
Strand 4	C	390	392	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	332	337	anti-parallel
Strand 3	C	395	402	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	342	first strand
Strand 2	C	350	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4J