Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P4O entry

There are 6 chains in PDB entry 6P4O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	GLU 439
B	MET 1	LYS 479
C	PRO -4	ARG 432
D	MET 1	ASP 477
E	SER -1	ARG 435
F	MET 1	ASN 481

There are126 helices in PDB entry 6P4O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	46	Right-handed alpha
Helix 2	AA2	A	70	82	Right-handed alpha
Helix 3	AA3	A	95	108	Right-handed alpha
Helix 4	AA4	A	117	133	Right-handed alpha
Helix 5	AA5	A	154	160	Right-handed alpha
Helix 6	AA6	A	160	165	Right-handed alpha
Helix 7	AA7	A	176	179	Right-handed 310
Helix 8	AA8	A	181	191	Right-handed alpha
Helix 9	AA9	A	208	211	Right-handed 310
Helix 10	AB1	A	212	217	Right-handed alpha
Helix 11	AB2	A	225	230	Right-handed alpha
Helix 12	AB3	A	247	268	Right-handed alpha
Helix 13	AB4	A	274	286	Right-handed alpha
Helix 14	AB5	A	288	307	Right-handed alpha
Helix 15	AB6	A	308	322	Right-handed alpha
Helix 16	AB7	A	334	345	Right-handed alpha
Helix 17	AB8	A	354	368	Right-handed alpha
Helix 18	AB9	A	400	413	Right-handed alpha
Helix 19	AC1	A	427	434	Right-handed alpha
Helix 20	AC2	B	3	7	Right-handed 310
Helix 21	AC3	B	22	24	Right-handed 310
Helix 22	AC4	B	25	36	Right-handed alpha
Helix 23	AC5	B	41	49	Right-handed alpha
Helix 24	AC6	B	49	56	Right-handed alpha
Helix 25	AC7	B	57	71	Right-handed alpha
Helix 26	AC8	B	81	90	Right-handed alpha
Helix 27	AC9	B	91	93	Right-handed 310
Helix 28	AD1	B	97	113	Right-handed alpha
Helix 29	AD2	B	115	120	Right-handed alpha
Helix 30	AD3	B	124	128	Right-handed 310
Helix 31	AD4	B	137	156	Right-handed alpha
Helix 32	AD5	B	167	179	Right-handed alpha
Helix 33	AD6	B	202	219	Right-handed alpha
Helix 34	AD7	B	264	275	Right-handed alpha
Helix 35	AD8	B	316	327	Right-handed alpha
Helix 36	AD9	B	328	330	Right-handed 310
Helix 37	AE1	B	360	369	Right-handed alpha
Helix 38	AE2	B	369	374	Right-handed alpha
Helix 39	AE3	B	391	399	Right-handed alpha
Helix 40	AE4	B	402	409	Right-handed alpha
Helix 41	AE5	B	426	436	Right-handed alpha
Helix 42	AE6	B	443	450	Right-handed alpha
Helix 43	AE7	B	452	461	Right-handed alpha
Helix 44	AE8	C	35	46	Right-handed alpha
Helix 45	AE9	C	70	82	Right-handed alpha
Helix 46	AF1	C	95	108	Right-handed alpha
Helix 47	AF2	C	117	133	Right-handed alpha
Helix 48	AF3	C	154	160	Right-handed alpha
Helix 49	AF4	C	160	165	Right-handed alpha
Helix 50	AF5	C	175	179	Right-handed 310
Helix 51	AF6	C	181	191	Right-handed alpha
Helix 52	AF7	C	208	211	Right-handed 310
Helix 53	AF8	C	212	217	Right-handed alpha
Helix 54	AF9	C	225	230	Right-handed alpha
Helix 55	AG1	C	247	269	Right-handed alpha
Helix 56	AG2	C	274	285	Right-handed alpha
Helix 57	AG3	C	288	307	Right-handed alpha
Helix 58	AG4	C	308	322	Right-handed alpha
Helix 59	AG5	C	334	345	Right-handed alpha
Helix 60	AG6	C	354	368	Right-handed alpha
Helix 61	AG7	C	400	413	Right-handed alpha
Helix 62	AG8	C	426	430	Right-handed alpha
Helix 63	AG9	D	3	7	Right-handed 310
Helix 64	AH1	D	22	24	Right-handed 310
Helix 65	AH2	D	25	36	Right-handed alpha
Helix 66	AH3	D	41	49	Right-handed alpha
Helix 67	AH4	D	49	56	Right-handed alpha
Helix 68	AH5	D	57	71	Right-handed alpha
Helix 69	AH6	D	81	90	Right-handed alpha
Helix 70	AH7	D	91	93	Right-handed 310
Helix 71	AH8	D	97	113	Right-handed alpha
Helix 72	AH9	D	115	120	Right-handed alpha
Helix 73	AI1	D	139	155	Right-handed alpha
Helix 74	AI2	D	167	179	Right-handed alpha
Helix 75	AI3	D	202	219	Right-handed alpha
Helix 76	AI4	D	263	275	Right-handed alpha
Helix 77	AI5	D	316	327	Right-handed alpha
Helix 78	AI6	D	328	330	Right-handed 310
Helix 79	AI7	D	360	375	Right-handed alpha
Helix 80	AI8	D	391	399	Right-handed alpha
Helix 81	AI9	D	402	409	Right-handed alpha
Helix 82	AJ1	D	426	436	Right-handed alpha
Helix 83	AJ2	D	443	450	Right-handed alpha
Helix 84	AJ3	D	452	460	Right-handed alpha
Helix 85	AJ4	E	35	46	Right-handed alpha
Helix 86	AJ5	E	70	82	Right-handed alpha
Helix 87	AJ6	E	95	108	Right-handed alpha
Helix 88	AJ7	E	117	133	Right-handed alpha
Helix 89	AJ8	E	154	160	Right-handed alpha
Helix 90	AJ9	E	160	165	Right-handed alpha
Helix 91	AK1	E	175	179	Right-handed 310
Helix 92	AK2	E	181	191	Right-handed alpha
Helix 93	AK3	E	208	211	Right-handed 310
Helix 94	AK4	E	212	217	Right-handed alpha
Helix 95	AK5	E	225	230	Right-handed alpha
Helix 96	AK6	E	247	268	Right-handed alpha
Helix 97	AK7	E	274	285	Right-handed alpha
Helix 98	AK8	E	288	307	Right-handed alpha
Helix 99	AK9	E	308	322	Right-handed alpha
Helix 100	AL1	E	334	345	Right-handed alpha
Helix 101	AL2	E	354	368	Right-handed alpha
Helix 102	AL3	E	400	413	Right-handed alpha
Helix 103	AL4	E	427	432	Right-handed alpha
Helix 104	AL5	F	3	7	Right-handed 310
Helix 105	AL6	F	22	24	Right-handed 310
Helix 106	AL7	F	25	36	Right-handed alpha
Helix 107	AL8	F	41	49	Right-handed alpha
Helix 108	AL9	F	49	56	Right-handed alpha
Helix 109	AM1	F	57	71	Right-handed alpha
Helix 110	AM2	F	81	90	Right-handed alpha
Helix 111	AM3	F	91	93	Right-handed 310
Helix 112	AM4	F	97	113	Right-handed alpha
Helix 113	AM5	F	115	120	Right-handed alpha
Helix 114	AM6	F	124	128	Right-handed 310
Helix 115	AM7	F	137	156	Right-handed alpha
Helix 116	AM8	F	167	179	Right-handed alpha
Helix 117	AM9	F	202	219	Right-handed alpha
Helix 118	AN1	F	261	275	Right-handed alpha
Helix 119	AN2	F	316	327	Right-handed alpha
Helix 120	AN3	F	328	330	Right-handed 310
Helix 121	AN4	F	360	369	Right-handed alpha
Helix 122	AN5	F	391	399	Right-handed alpha
Helix 123	AN6	F	402	409	Right-handed alpha
Helix 124	AN7	F	426	436	Right-handed alpha
Helix 125	AN8	F	443	450	Right-handed alpha
Helix 126	AN9	F	452	460	Right-handed alpha

There are 26 sheets in PDB entry 6P4O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	28	32	anti-parallel
Strand 3	A	10	13	anti-parallel
Strand 4	A	2	7	anti-parallel
Strand 5	A	50	53	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	137	140	anti-parallel
Strand 3	A	149	153	parallel
Strand 4	A	111	115	parallel
Strand 5	A	170	174	parallel
Strand 6	A	195	200	parallel
Strand 7	A	85	89	parallel
Strand 8	A	220	223	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	244	first strand
Strand 2	A	418	425	parallel
Strand 3	A	390	393	parallel
Strand 4	A	327	330	parallel
Strand 5	A	372	375	parallel
Strand 6	A	348	349	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	15	18	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	130	132	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	190	194	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	224	231	anti-parallel
Strand 5	B	237	244	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	302	first strand
Strand 2	B	305	312	anti-parallel
Strand 3	B	334	339	parallel
Strand 4	B	352	355	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	417	first strand
Strand 2	B	424	425	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	441	first strand
Strand 2	B	475	476	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	28	32	anti-parallel
Strand 3	C	10	13	anti-parallel
Strand 4	C	2	7	anti-parallel
Strand 5	C	50	53	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	149	153	parallel
Strand 4	C	111	115	parallel
Strand 5	C	170	173	parallel
Strand 6	C	195	200	parallel
Strand 7	C	85	89	parallel
Strand 8	C	220	223	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	244	first strand
Strand 2	C	418	425	parallel
Strand 3	C	390	394	parallel
Strand 4	C	327	330	parallel
Strand 5	C	372	375	parallel
Strand 6	C	348	349	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	15	18	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	130	132	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	185	first strand
Strand 2	D	190	194	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	224	231	anti-parallel
Strand 5	D	237	244	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	302	first strand
Strand 2	D	305	311	anti-parallel
Strand 3	D	334	339	parallel
Strand 4	D	352	355	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	417	first strand
Strand 2	D	424	425	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	28	32	anti-parallel
Strand 3	E	10	13	anti-parallel
Strand 4	E	2	7	anti-parallel
Strand 5	E	50	53	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	144	first strand
Strand 2	E	137	140	anti-parallel
Strand 3	E	149	153	parallel
Strand 4	E	111	115	parallel
Strand 5	E	170	173	parallel
Strand 6	E	195	200	parallel
Strand 7	E	85	89	parallel
Strand 8	E	220	223	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	244	first strand
Strand 2	E	419	425	parallel
Strand 3	E	390	394	parallel
Strand 4	E	327	331	parallel
Strand 5	E	372	375	parallel
Strand 6	E	348	349	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	15	18	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	74	first strand
Strand 2	F	130	132	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	184	first strand
Strand 2	F	190	194	anti-parallel
Strand 3	F	159	163	anti-parallel
Strand 4	F	224	231	anti-parallel
Strand 5	F	237	243	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	281	282	first strand
Strand 2	F	298	302	anti-parallel
Strand 3	F	305	312	anti-parallel
Strand 4	F	334	339	parallel
Strand 5	F	352	355	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	416	417	first strand
Strand 2	F	424	425	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	439	440	first strand
Strand 2	F	476	477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P4O

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4O