Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P4W entry

There are 4 chains in PDB entry 6P4W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	SER 434
B	MET 0	ASN 373
C	GLY 0	SER 434
D	GLY 1	ASN 373

There are 70 helices in PDB entry 6P4W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	45	Right-handed alpha
Helix 2	AA2	A	70	84	Right-handed alpha
Helix 3	AA3	A	95	108	Right-handed alpha
Helix 4	AA4	A	117	133	Right-handed alpha
Helix 5	AA5	A	154	160	Right-handed alpha
Helix 6	AA6	A	160	165	Right-handed alpha
Helix 7	AA7	A	176	179	Right-handed 310
Helix 8	AA8	A	181	191	Right-handed alpha
Helix 9	AA9	A	208	211	Right-handed 310
Helix 10	AB1	A	212	217	Right-handed alpha
Helix 11	AB2	A	225	230	Right-handed alpha
Helix 12	AB3	A	247	268	Right-handed alpha
Helix 13	AB4	A	274	286	Right-handed alpha
Helix 14	AB5	A	288	307	Right-handed alpha
Helix 15	AB6	A	308	322	Right-handed alpha
Helix 16	AB7	A	333	345	Right-handed alpha
Helix 17	AB8	A	354	367	Right-handed alpha
Helix 18	AB9	A	400	413	Right-handed alpha
Helix 19	AC1	B	3	7	Right-handed 310
Helix 20	AC2	B	22	24	Right-handed 310
Helix 21	AC3	B	25	36	Right-handed alpha
Helix 22	AC4	B	41	49	Right-handed alpha
Helix 23	AC5	B	51	56	Right-handed alpha
Helix 24	AC6	B	57	71	Right-handed alpha
Helix 25	AC7	B	81	91	Right-handed alpha
Helix 26	AC8	B	97	113	Right-handed alpha
Helix 27	AC9	B	115	120	Right-handed alpha
Helix 28	AD1	B	124	128	Right-handed 310
Helix 29	AD2	B	137	155	Right-handed alpha
Helix 30	AD3	B	167	178	Right-handed alpha
Helix 31	AD4	B	202	220	Right-handed alpha
Helix 32	AD5	B	261	275	Right-handed alpha
Helix 33	AD6	B	316	328	Right-handed alpha
Helix 34	AD7	B	329	331	Right-handed 310
Helix 35	AD8	B	360	373	Right-handed alpha
Helix 36	AD9	C	35	45	Right-handed alpha
Helix 37	AE1	C	70	84	Right-handed alpha
Helix 38	AE2	C	95	108	Right-handed alpha
Helix 39	AE3	C	117	133	Right-handed alpha
Helix 40	AE4	C	154	160	Right-handed alpha
Helix 41	AE5	C	160	165	Right-handed alpha
Helix 42	AE6	C	176	179	Right-handed 310
Helix 43	AE7	C	183	191	Right-handed alpha
Helix 44	AE8	C	208	211	Right-handed 310
Helix 45	AE9	C	212	217	Right-handed alpha
Helix 46	AF1	C	225	230	Right-handed alpha
Helix 47	AF2	C	247	268	Right-handed alpha
Helix 48	AF3	C	274	286	Right-handed alpha
Helix 49	AF4	C	288	307	Right-handed alpha
Helix 50	AF5	C	308	322	Right-handed alpha
Helix 51	AF6	C	333	345	Right-handed alpha
Helix 52	AF7	C	354	367	Right-handed alpha
Helix 53	AF8	C	400	413	Right-handed alpha
Helix 54	AF9	D	3	7	Right-handed 310
Helix 55	AG1	D	22	24	Right-handed 310
Helix 56	AG2	D	25	36	Right-handed alpha
Helix 57	AG3	D	41	49	Right-handed alpha
Helix 58	AG4	D	49	56	Right-handed alpha
Helix 59	AG5	D	57	70	Right-handed alpha
Helix 60	AG6	D	81	91	Right-handed alpha
Helix 61	AG7	D	97	113	Right-handed alpha
Helix 62	AG8	D	115	120	Right-handed alpha
Helix 63	AG9	D	124	128	Right-handed 310
Helix 64	AH1	D	137	155	Right-handed alpha
Helix 65	AH2	D	167	179	Right-handed alpha
Helix 66	AH3	D	202	218	Right-handed alpha
Helix 67	AH4	D	261	275	Right-handed alpha
Helix 68	AH5	D	316	329	Right-handed alpha
Helix 69	AH6	D	341	343	Right-handed 310
Helix 70	AH7	D	360	370	Right-handed alpha

There are 13 sheets in PDB entry 6P4W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	28	32	anti-parallel
Strand 3	A	10	13	anti-parallel
Strand 4	A	1	7	anti-parallel
Strand 5	A	49	53	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	144	first strand
Strand 2	A	137	140	anti-parallel
Strand 3	A	149	153	parallel
Strand 4	A	111	115	parallel
Strand 5	A	170	174	parallel
Strand 6	A	195	200	parallel
Strand 7	A	85	89	parallel
Strand 8	A	220	223	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	244	first strand
Strand 2	A	418	425	parallel
Strand 3	A	390	393	parallel
Strand 4	A	327	331	parallel
Strand 5	A	372	376	parallel
Strand 6	A	348	349	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	15	18	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	244	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	157	163	anti-parallel
Strand 4	B	190	194	anti-parallel
Strand 5	B	182	185	anti-parallel
Strand 6	B	292	294	anti-parallel
Strand 7	B	287	288	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	298	302	anti-parallel
Strand 3	B	305	312	anti-parallel
Strand 4	B	334	339	parallel
Strand 5	B	352	355	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	28	32	anti-parallel
Strand 3	C	10	13	anti-parallel
Strand 4	C	1	7	anti-parallel
Strand 5	C	49	53	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	145	first strand
Strand 2	C	137	140	anti-parallel
Strand 3	C	149	153	parallel
Strand 4	C	111	115	parallel
Strand 5	C	170	174	parallel
Strand 6	C	195	200	parallel
Strand 7	C	85	89	parallel
Strand 8	C	220	223	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	244	first strand
Strand 2	C	419	425	parallel
Strand 3	C	390	393	parallel
Strand 4	C	327	331	parallel
Strand 5	C	372	376	parallel
Strand 6	C	348	349	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	15	18	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	130	132	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	244	first strand
Strand 2	D	224	231	anti-parallel
Strand 3	D	157	163	anti-parallel
Strand 4	D	190	194	anti-parallel
Strand 5	D	182	185	anti-parallel
Strand 6	D	292	294	anti-parallel
Strand 7	D	287	288	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	282	first strand
Strand 2	D	298	302	anti-parallel
Strand 3	D	305	311	anti-parallel
Strand 4	D	334	339	parallel
Strand 5	D	352	355	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P4W

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P4W