Analysis of interatomic Contacts of Structural Units in PDB entry:
6P54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P54 entry

There are 2 chains in PDB entry 6P54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 236ALA 574
B
 GLY 235ALA 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6P54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 258Right-handed alpha
Helix 2
AA2
A
299 304Right-handed alpha
Helix 3
AA3
A
308 311Right-handed 310
Helix 4
AA4
A
312 323Right-handed alpha
Helix 5
AA5
A
355 362Right-handed alpha
Helix 6
AA6
A
363 372Right-handed alpha
Helix 7
AA7
A
375 386Right-handed alpha
Helix 8
AA8
A
406 410Right-handed 310
Helix 9
AA9
A
411 419Right-handed alpha
Helix 10
AB1
A
427 440Right-handed alpha
Helix 11
AB2
A
463 476Right-handed alpha
Helix 12
AB3
A
484 488Right-handed 310
Helix 13
AB4
A
544 564Right-handed alpha
Helix 14
AB5
B
240 258Right-handed alpha
Helix 15
AB6
B
299 304Right-handed alpha
Helix 16
AB7
B
308 311Right-handed 310
Helix 17
AB8
B
312 323Right-handed alpha
Helix 18
AB9
B
355 362Right-handed alpha
Helix 19
AC1
B
363 372Right-handed alpha
Helix 20
AC2
B
375 386Right-handed alpha
Helix 21
AC3
B
406 410Right-handed 310
Helix 22
AC4
B
411 420Right-handed alpha
Helix 23
AC5
B
427 440Right-handed alpha
Helix 24
AC6
B
463 475Right-handed alpha
Helix 25
AC7
B
476 478Right-handed 310
Helix 26
AC8
B
484 488Right-handed 310
Helix 27
AC9
B
544 549Right-handed alpha
Helix 28
AD1
B
549 564Right-handed alpha
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There are 8 sheets in PDB entry 6P54. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 280first strand
Strand 2
A
262 269anti-parallel
Strand 3
A
529 536anti-parallel
Strand 4
A
509 522anti-parallel
Strand 5
A
495 504anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 333first strand
Strand 2
A
352 354anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
342 344anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
459 460anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 280first strand
Strand 2
B
262 269anti-parallel
Strand 3
B
529 536anti-parallel
Strand 4
B
508 522anti-parallel
Strand 5
B
495 505anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 333first strand
Strand 2
B
352 354anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
342 344anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 444first strand
Strand 2
B
459 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il