Analysis of interatomic Contacts of Structural Units in PDB entry:
6P59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P59 entry

There are 8 chains in PDB entry 6P59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 6	HIS 160
W	MET 1	GLU 98
Z	MET 17	CYS 112
F	GLU 3	ALA 220
A	VAL 5	ARG 161
D	MET 1	GLU 98
E	MET 17	CYS 112
B	GLU 3	ALA 220

There are 39 helices in PDB entry 6P59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	7	14	Right-handed alpha
Helix 2	AA2	C	36	50	Right-handed alpha
Helix 3	AA3	C	72	74	Right-handed 310
Helix 4	AA4	C	128	135	Right-handed alpha
Helix 5	AA5	C	136	138	Right-handed 310
Helix 6	AA6	C	139	149	Right-handed alpha
Helix 7	AA7	W	23	36	Right-handed alpha
Helix 8	AA8	W	38	42	Right-handed 310
Helix 9	AA9	W	56	61	Right-handed alpha
Helix 10	AB1	Z	33	37	Right-handed alpha
Helix 11	AB2	Z	39	47	Right-handed alpha
Helix 12	AB3	Z	66	83	Right-handed alpha
Helix 13	AB4	Z	96	111	Right-handed alpha
Helix 14	AB5	F	15	32	Right-handed alpha
Helix 15	AB6	F	106	116	Right-handed alpha
Helix 16	AB7	F	125	133	Right-handed alpha
Helix 17	AB8	F	141	145	Right-handed 310
Helix 18	AB9	F	151	167	Right-handed alpha
Helix 19	AC1	F	211	217	Right-handed alpha
Helix 20	AC2	A	6	14	Right-handed alpha
Helix 21	AC3	A	36	50	Right-handed alpha
Helix 22	AC4	A	72	74	Right-handed 310
Helix 23	AC5	A	128	134	Right-handed alpha
Helix 24	AC6	A	138	149	Right-handed alpha
Helix 25	AC7	D	23	36	Right-handed alpha
Helix 26	AC8	D	38	42	Right-handed 310
Helix 27	AC9	D	56	61	Right-handed alpha
Helix 28	AD1	E	33	37	Right-handed alpha
Helix 29	AD2	E	39	47	Right-handed alpha
Helix 30	AD3	E	53	57	Right-handed 310
Helix 31	AD4	E	66	83	Right-handed alpha
Helix 32	AD5	E	96	110	Right-handed alpha
Helix 33	AD6	B	15	32	Right-handed alpha
Helix 34	AD7	B	44	48	Right-handed 310
Helix 35	AD8	B	106	115	Right-handed alpha
Helix 36	AD9	B	125	133	Right-handed alpha
Helix 37	AE1	B	141	145	Right-handed 310
Helix 38	AE2	B	151	165	Right-handed alpha
Helix 39	AE3	B	211	217	Right-handed alpha

There are 7 sheets in PDB entry 6P59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	106	115	anti-parallel
Strand 4	C	120	127	anti-parallel
Strand 5	C	24	28	anti-parallel
Strand 6	C	55	59	anti-parallel
Strand 7	C	64	70	anti-parallel
Strand 8	F	6	14	anti-parallel
Strand 9	F	85	94	anti-parallel
Strand 10	F	66	76	anti-parallel
Strand 11	F	54	62	anti-parallel
Strand 12	F	41	43	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	F	101	104	parallel
Strand 4	F	85	94	anti-parallel
Strand 5	F	66	76	anti-parallel
Strand 6	F	54	62	anti-parallel
Strand 7	F	41	43	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	49	50	first strand
Strand 2	W	44	46	anti-parallel
Strand 3	W	73	77	anti-parallel
Strand 4	W	2	9	parallel
Strand 5	W	12	19	anti-parallel
Strand 6	Z	28	32	parallel
Strand 7	Z	18	22	anti-parallel
Strand 8	Z	59	61	parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	94	103	anti-parallel
Strand 3	A	106	115	anti-parallel
Strand 4	A	120	127	anti-parallel
Strand 5	A	25	28	anti-parallel
Strand 6	A	55	59	anti-parallel
Strand 7	A	64	70	anti-parallel
Strand 8	B	6	14	anti-parallel
Strand 9	B	85	94	anti-parallel
Strand 10	B	66	76	anti-parallel
Strand 11	B	54	61	anti-parallel
Strand 12	B	41	43	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	94	103	anti-parallel
Strand 3	B	101	104	parallel
Strand 4	B	85	94	anti-parallel
Strand 5	B	66	76	anti-parallel
Strand 6	B	54	61	anti-parallel
Strand 7	B	41	43	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	43	46	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	2	9	parallel
Strand 5	D	12	19	anti-parallel
Strand 6	E	28	32	parallel
Strand 7	E	18	22	anti-parallel
Strand 8	E	59	61	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	84	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P59

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P59