Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P5A entry

There are 10 chains in PDB entry 6P5A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 128	ARG 569
B	THR 617	LYS 734
C	C 1	A 9
D	A 1	G 15
E	C -32	G 17
G	GLU 128	ARG 569
H	THR 617	LYS 734
I	C 1	A 9
J	A 1	G 15
K	C -32	G 17

There are 50 helices in PDB entry 6P5A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	140	Right-handed alpha
Helix 2	AA2	A	141	149	Right-handed alpha
Helix 3	AA3	A	158	170	Right-handed alpha
Helix 4	AA4	A	172	183	Right-handed alpha
Helix 5	AA5	A	188	197	Right-handed alpha
Helix 6	AA6	A	206	213	Right-handed alpha
Helix 7	AA7	A	279	294	Right-handed alpha
Helix 8	AA8	A	305	315	Right-handed alpha
Helix 9	AA9	A	339	354	Right-handed alpha
Helix 10	AB1	A	365	376	Right-handed alpha
Helix 11	AB2	A	387	392	Right-handed alpha
Helix 12	AB3	A	400	408	Right-handed alpha
Helix 13	AB4	A	409	422	Right-handed alpha
Helix 14	AB5	A	428	446	Right-handed alpha
Helix 15	AB6	A	465	480	Right-handed alpha
Helix 16	AB7	A	491	515	Right-handed alpha
Helix 17	AB8	A	521	526	Right-handed 310
Helix 18	AB9	A	527	540	Right-handed alpha
Helix 19	AC1	A	548	563	Right-handed alpha
Helix 20	AC2	A	564	568	Right-handed 310
Helix 21	AC3	B	620	639	Right-handed alpha
Helix 22	AC4	B	652	657	Right-handed alpha
Helix 23	AC5	B	667	682	Right-handed alpha
Helix 24	AC6	B	693	702	Right-handed alpha
Helix 25	AC7	B	708	734	Right-handed alpha
Helix 26	AC8	G	129	140	Right-handed alpha
Helix 27	AC9	G	141	149	Right-handed alpha
Helix 28	AD1	G	158	170	Right-handed alpha
Helix 29	AD2	G	172	183	Right-handed alpha
Helix 30	AD3	G	188	197	Right-handed alpha
Helix 31	AD4	G	206	213	Right-handed alpha
Helix 32	AD5	G	279	294	Right-handed alpha
Helix 33	AD6	G	305	315	Right-handed alpha
Helix 34	AD7	G	339	354	Right-handed alpha
Helix 35	AD8	G	365	376	Right-handed alpha
Helix 36	AD9	G	387	392	Right-handed alpha
Helix 37	AE1	G	400	408	Right-handed alpha
Helix 38	AE2	G	409	422	Right-handed alpha
Helix 39	AE3	G	428	446	Right-handed alpha
Helix 40	AE4	G	465	480	Right-handed alpha
Helix 41	AE5	G	491	515	Right-handed alpha
Helix 42	AE6	G	521	526	Right-handed 310
Helix 43	AE7	G	527	540	Right-handed alpha
Helix 44	AE8	G	548	563	Right-handed alpha
Helix 45	AE9	G	564	568	Right-handed 310
Helix 46	AF1	H	620	639	Right-handed alpha
Helix 47	AF2	H	652	657	Right-handed alpha
Helix 48	AF3	H	667	682	Right-handed alpha
Helix 49	AF4	H	693	702	Right-handed alpha
Helix 50	AF5	H	708	734	Right-handed alpha

There are 6 sheets in PDB entry 6P5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	267	274	anti-parallel
Strand 3	A	253	261	anti-parallel
Strand 4	A	224	233	anti-parallel
Strand 5	A	296	302	parallel
Strand 6	A	333	338	parallel
Strand 7	A	323	325	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	246	248	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	361	363	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	G	267	274	anti-parallel
Strand 3	G	253	261	anti-parallel
Strand 4	G	224	233	anti-parallel
Strand 5	G	296	302	parallel
Strand 6	G	333	338	parallel
Strand 7	G	323	325	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	239	241	first strand
Strand 2	G	246	248	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	356	358	first strand
Strand 2	G	361	363	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P5A

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5A