Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P5B entry

There are 3 chains in PDB entry 6P5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -3GLU 384
C
 GLY 3ILE 152
E
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 6P5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-3 2Right-handed alpha
Helix 2
AA2
A
9 25Right-handed alpha
Helix 3
AA3
A
26 30Right-handed 310
Helix 4
AA4
A
32 45Right-handed alpha
Helix 5
AA5
A
46 48Right-handed 310
Helix 6
AA6
A
53 65Right-handed alpha
Helix 7
AA7
A
73 97Right-handed alpha
Helix 8
AA8
A
106 111Right-handed alpha
Helix 9
AA9
A
137 141Right-handed 310
Helix 10
AB1
A
173 184Right-handed alpha
Helix 11
AB2
A
186 189Right-handed 310
Helix 12
AB3
A
200 203Right-handed 310
Helix 13
AB4
A
204 222Right-handed alpha
Helix 14
AB5
A
242 246Right-handed 310
Helix 15
AB6
A
259 266Right-handed alpha
Helix 16
AB7
A
267 274Right-handed alpha
Helix 17
AB8
A
276 290Right-handed alpha
Helix 18
AB9
A
292 305Right-handed alpha
Helix 19
AC1
A
315 319Right-handed 310
Helix 20
AC2
A
334 353Right-handed alpha
Helix 21
AC3
A
357 381Right-handed alpha
Helix 22
AC4
C
5 18Right-handed alpha
Helix 23
AC5
C
100 114Right-handed alpha
Helix 24
AC6
C
123 132Right-handed alpha
Helix 25
AC7
C
132 148Right-handed alpha
Helix 26
AC8
E
22 35Right-handed alpha
Helix 27
AC9
E
37 41Right-handed 310
Helix 28
AD1
E
56 60Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 6P5B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
324 332anti-parallel
Strand 3
A
118 127anti-parallel
Strand 4
A
227 237anti-parallel
Strand 5
A
249 251anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 169first strand
Strand 2
A
158 161anti-parallel
Strand 3
A
150 153anti-parallel
Strand 4
A
132 135parallel
Strand 5
A
191 193anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 28first strand
Strand 2
C
31 40anti-parallel
Strand 3
C
51 57anti-parallel
Strand 4
C
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 16first strand
Strand 2
E
2 7anti-parallel
Strand 3
E
66 70parallel
Strand 4
E
42 45anti-parallel
Strand 5
E
48 49anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il