Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P5L entry

There are 3 chains in PDB entry 6P5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 543MET 883
B
 GLN 538LYS 882
D
 ARG 490LYS 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6P5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
544 548Right-handed 310
Helix 2
AA2
A
555 561Right-handed alpha
Helix 3
AA3
A
573 576Right-handed 310
Helix 4
AA4
A
601 614Right-handed alpha
Helix 5
AA5
A
647 652Right-handed alpha
Helix 6
AA6
A
712 715Right-handed 310
Helix 7
AA7
A
716 724Right-handed alpha
Helix 8
AA8
A
752 757Right-handed alpha
Helix 9
AA9
A
772 778Right-handed 310
Helix 10
AB1
A
782 792Right-handed alpha
Helix 11
AB2
A
818 829Right-handed alpha
Helix 12
AB3
A
833 835Right-handed 310
Helix 13
AB4
A
860 866Right-handed alpha
Helix 14
AB5
B
542 560Right-handed alpha
Helix 15
AB6
B
573 576Right-handed 310
Helix 16
AB7
B
601 613Right-handed alpha
Helix 17
AB8
B
666 672Right-handed alpha
Helix 18
AB9
B
712 715Right-handed 310
Helix 19
AC1
B
716 725Right-handed alpha
Helix 20
AC2
B
752 757Right-handed alpha
Helix 21
AC3
B
772 777Right-handed 310
Helix 22
AC4
B
782 792Right-handed alpha
Helix 23
AC5
B
818 831Right-handed alpha
Helix 24
AC6
B
833 835Right-handed 310
Helix 25
AC7
B
862 866Right-handed 310
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There are 6 sheets in PDB entry 6P5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 597first strand
Strand 2
A
564 571anti-parallel
Strand 3
A
658 664parallel
Strand 4
A
620 627anti-parallel
Strand 5
A
633 635anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
698 708first strand
Strand 2
A
684 693anti-parallel
Strand 3
A
765 770parallel
Strand 4
A
732 739anti-parallel
Strand 5
A
742 745anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 814first strand
Strand 2
A
793 800anti-parallel
Strand 3
A
875 880parallel
Strand 4
A
837 842anti-parallel
Strand 5
A
849 853anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 597first strand
Strand 2
B
564 571anti-parallel
Strand 3
B
658 664parallel
Strand 4
B
620 627anti-parallel
Strand 5
B
633 635anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
698 708first strand
Strand 2
B
684 693anti-parallel
Strand 3
B
765 770parallel
Strand 4
B
732 736anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
810 814first strand
Strand 2
B
793 800anti-parallel
Strand 3
B
875 880parallel
Strand 4
B
837 842anti-parallel
Strand 5
B
849 853anti-parallel
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