Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P5R entry

There is 1 chain in PDB entry 6P5R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 331GLY 710
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6P5R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
331 341Right-handed alpha
Helix 2
AA2
A
417 421Right-handed 310
Helix 3
AA3
A
435 439Right-handed alpha
Helix 4
AA4
A
440 442Right-handed 310
Helix 5
AA5
A
446 457Right-handed alpha
Helix 6
AA6
A
466 472Right-handed 310
Helix 7
AA7
A
506 521Right-handed alpha
Helix 8
AA8
A
576 590Right-handed alpha
Helix 9
AA9
A
594 598Right-handed 310
Helix 10
AB1
A
608 612Right-handed 310
Helix 11
AB2
A
636 640Right-handed 310
Helix 12
AB3
A
645 650Right-handed alpha
Helix 13
AB4
A
654 664Right-handed alpha
Helix 14
AB5
A
675 687Right-handed alpha
Helix 15
AB6
A
689 695Right-handed alpha
Helix 16
AB7
A
698 702Right-handed 310
Helix 17
AB8
A
703 708Right-handed alpha
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There are 3 sheets in PDB entry 6P5R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
427 434anti-parallel
Strand 3
A
498 505anti-parallel
Strand 4
A
459 464anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
542 550anti-parallel
Strand 3
A
527 535anti-parallel
Strand 4
A
617 623parallel
Strand 5
A
599 604anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 565first strand
Strand 2
A
542 550anti-parallel
Strand 3
A
670 674anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il