Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P5S entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 6P5S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 185THR 360
A
 LEU 362ASP 440
A
 PRO 442PHE 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6P5S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 252Right-handed alpha
Helix 2
AA2
A
254 259Right-handed alpha
Helix 3
AA3
A
284 291Right-handed alpha
Helix 4
AA4
A
297 318Right-handed alpha
Helix 5
AA5
A
326 328Right-handed 310
Helix 6
AA6
A
364 368Right-handed 310
Helix 7
AA7
A
369 375Right-handed alpha
Helix 8
AA8
A
381 397Right-handed alpha
Helix 9
AA9
A
405 418Right-handed alpha
Helix 10
AB1
A
421 426Right-handed alpha
Helix 11
AB2
A
430 433Right-handed 310
Helix 12
AB3
A
450 459Right-handed alpha
Helix 13
AB4
A
472 477Right-handed 310
Helix 14
AB5
A
486 508Right-handed alpha
Helix 15
AB6
A
511 515Right-handed 310
Helix 16
AB7
A
517 523Right-handed alpha
Helix 17
AB8
A
524 529Right-handed alpha
Helix 18
AB9
A
530 535Right-handed 310
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There are 4 sheets in PDB entry 6P5S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
198 206anti-parallel
Strand 3
A
212 218anti-parallel
Strand 4
A
224 229anti-parallel
Strand 5
A
274 278anti-parallel
Strand 6
A
263 267anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 283first strand
Strand 2
A
330 334anti-parallel
Strand 3
A
338 344anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
351 352anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
446 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il