Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P5U entry

There are 6 chains in PDB entry 6P5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 12	ASP 254
B	THR 14	ILE 253
C	GLY 12	ILE 253
D	LEU 10	ASP 254
E	ALA 9	ASP 254
F	LEU 10	GLY 120

There are 75 helices in PDB entry 6P5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	35	Right-handed 310
Helix 2	AA2	A	39	54	Right-handed alpha
Helix 3	AA3	A	89	104	Right-handed alpha
Helix 4	AA4	A	126	133	Right-handed alpha
Helix 5	AA5	A	146	152	Right-handed 310
Helix 6	AA6	A	158	167	Right-handed alpha
Helix 7	AA7	A	168	179	Right-handed alpha
Helix 8	AA8	A	183	190	Right-handed alpha
Helix 9	AA9	A	198	200	Right-handed 310
Helix 10	AB1	A	201	215	Right-handed alpha
Helix 11	AB2	A	217	231	Right-handed alpha
Helix 12	AB3	A	235	254	Right-handed alpha
Helix 13	AB4	B	31	35	Right-handed 310
Helix 14	AB5	B	39	54	Right-handed alpha
Helix 15	AB6	B	81	85	Right-handed 310
Helix 16	AB7	B	88	104	Right-handed alpha
Helix 17	AB8	B	126	133	Right-handed alpha
Helix 18	AB9	B	146	152	Right-handed 310
Helix 19	AC1	B	158	167	Right-handed alpha
Helix 20	AC2	B	168	179	Right-handed alpha
Helix 21	AC3	B	183	190	Right-handed alpha
Helix 22	AC4	B	198	200	Right-handed 310
Helix 23	AC5	B	201	215	Right-handed alpha
Helix 24	AC6	B	217	231	Right-handed alpha
Helix 25	AC7	B	235	253	Right-handed alpha
Helix 26	AC8	C	31	35	Right-handed 310
Helix 27	AC9	C	39	54	Right-handed alpha
Helix 28	AD1	C	88	104	Right-handed alpha
Helix 29	AD2	C	104	109	Right-handed alpha
Helix 30	AD3	C	126	133	Right-handed alpha
Helix 31	AD4	C	148	152	Right-handed 310
Helix 32	AD5	C	158	167	Right-handed alpha
Helix 33	AD6	C	168	179	Right-handed alpha
Helix 34	AD7	C	183	190	Right-handed alpha
Helix 35	AD8	C	198	215	Right-handed alpha
Helix 36	AD9	C	217	231	Right-handed alpha
Helix 37	AE1	C	235	253	Right-handed alpha
Helix 38	AE2	D	31	35	Right-handed 310
Helix 39	AE3	D	39	54	Right-handed alpha
Helix 40	AE4	D	89	104	Right-handed alpha
Helix 41	AE5	D	126	133	Right-handed alpha
Helix 42	AE6	D	148	152	Right-handed 310
Helix 43	AE7	D	158	167	Right-handed alpha
Helix 44	AE8	D	168	179	Right-handed alpha
Helix 45	AE9	D	183	190	Right-handed alpha
Helix 46	AF1	D	198	200	Right-handed 310
Helix 47	AF2	D	201	215	Right-handed alpha
Helix 48	AF3	D	217	231	Right-handed alpha
Helix 49	AF4	D	235	254	Right-handed alpha
Helix 50	AF5	E	31	35	Right-handed 310
Helix 51	AF6	E	39	54	Right-handed alpha
Helix 52	AF7	E	81	85	Right-handed 310
Helix 53	AF8	E	88	104	Right-handed alpha
Helix 54	AF9	E	104	109	Right-handed alpha
Helix 55	AG1	E	126	133	Right-handed alpha
Helix 56	AG2	E	148	152	Right-handed 310
Helix 57	AG3	E	158	167	Right-handed alpha
Helix 58	AG4	E	168	179	Right-handed alpha
Helix 59	AG5	E	184	190	Right-handed alpha
Helix 60	AG6	E	198	200	Right-handed 310
Helix 61	AG7	E	201	215	Right-handed alpha
Helix 62	AG8	E	217	231	Right-handed alpha
Helix 63	AG9	E	235	254	Right-handed alpha
Helix 64	AH1	F	31	35	Right-handed 310
Helix 65	AH2	F	39	54	Right-handed alpha
Helix 66	AH3	F	89	104	Right-handed alpha
Helix 67	AH4	F	126	133	Right-handed alpha
Helix 68	AH5	F	146	152	Right-handed 310
Helix 69	AH6	F	158	167	Right-handed alpha
Helix 70	AH7	F	168	179	Right-handed alpha
Helix 71	AH8	F	183	190	Right-handed alpha
Helix 72	AH9	F	198	200	Right-handed 310
Helix 73	AI1	F	201	215	Right-handed alpha
Helix 74	AI2	F	217	231	Right-handed alpha
Helix 75	AI3	F	235	254	Right-handed alpha

There are 12 sheets in PDB entry 6P5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	21	first strand
Strand 2	A	23	29	anti-parallel
Strand 3	A	59	66	parallel
Strand 4	A	114	118	parallel
Strand 5	A	135	139	parallel
Strand 6	A	195	197	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	121	123	parallel
Strand 3	A	144	145	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	21	first strand
Strand 2	B	24	29	anti-parallel
Strand 3	B	61	66	parallel
Strand 4	B	114	118	parallel
Strand 5	B	135	139	parallel
Strand 6	B	195	197	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	121	123	parallel
Strand 3	B	144	145	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	21	first strand
Strand 2	C	23	29	anti-parallel
Strand 3	C	59	66	parallel
Strand 4	C	114	118	parallel
Strand 5	C	135	139	parallel
Strand 6	C	195	197	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	121	123	parallel
Strand 3	C	144	145	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	21	first strand
Strand 2	D	23	29	anti-parallel
Strand 3	D	59	66	parallel
Strand 4	D	114	118	parallel
Strand 5	D	135	139	parallel
Strand 6	D	195	197	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	121	123	parallel
Strand 3	D	143	145	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	21	first strand
Strand 2	E	23	29	anti-parallel
Strand 3	E	59	66	parallel
Strand 4	E	114	118	parallel
Strand 5	E	135	139	parallel
Strand 6	E	195	197	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	72	first strand
Strand 2	E	121	123	parallel
Strand 3	E	143	145	parallel
Strand 4	E	182	183	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	16	21	first strand
Strand 2	F	23	29	anti-parallel
Strand 3	F	59	66	parallel
Strand 4	F	114	118	parallel
Strand 5	F	135	139	parallel
Strand 6	F	195	197	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	72	first strand
Strand 2	F	121	123	parallel
Strand 3	F	144	145	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5U