Analysis of interatomic Contacts of Structural Units in PDB entry:
6P60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P60 entry

There are 12 chains in PDB entry 6P60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	ILE 222
B	PHE 2	PRO 212
E	ALA 512	PHE 519
C	VAL 2	ILE 222
D	PHE 2	PRO 212
F	ALA 512	PHE 519
G	VAL 2	ILE 222
H	GLN 1	PRO 212
I	ALA 512	PHE 519
J	VAL 2	ILE 222
K	GLN 1	PRO 212
L	ALA 512	PHE 519

There are 34 helices in PDB entry 6P60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	66	Right-handed 310
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	136	141	Right-handed alpha
Helix 4	AA4	A	165	167	Right-handed 310
Helix 5	AA5	A	196	199	Right-handed 310
Helix 6	AA6	A	210	213	Right-handed 310
Helix 7	AA7	B	80	84	Right-handed 310
Helix 8	AA8	B	125	131	Right-handed alpha
Helix 9	AA9	B	186	192	Right-handed alpha
Helix 10	AB1	C	63	66	Right-handed 310
Helix 11	AB2	C	88	92	Right-handed 310
Helix 12	AB3	C	136	141	Right-handed alpha
Helix 13	AB4	C	165	167	Right-handed 310
Helix 14	AB5	C	196	201	Right-handed alpha
Helix 15	AB6	C	210	213	Right-handed 310
Helix 16	AB7	D	80	84	Right-handed 310
Helix 17	AB8	D	125	131	Right-handed alpha
Helix 18	AB9	D	186	192	Right-handed alpha
Helix 19	AC1	G	63	66	Right-handed 310
Helix 20	AC2	G	88	92	Right-handed 310
Helix 21	AC3	G	165	167	Right-handed 310
Helix 22	AC4	G	196	201	Right-handed alpha
Helix 23	AC5	G	210	213	Right-handed 310
Helix 24	AC6	H	80	84	Right-handed 310
Helix 25	AC7	H	125	131	Right-handed alpha
Helix 26	AC8	H	186	192	Right-handed alpha
Helix 27	AC9	J	63	66	Right-handed 310
Helix 28	AD1	J	88	92	Right-handed 310
Helix 29	AD2	J	165	167	Right-handed 310
Helix 30	AD3	J	196	201	Right-handed alpha
Helix 31	AD4	J	210	213	Right-handed 310
Helix 32	AD5	K	80	84	Right-handed 310
Helix 33	AD6	K	125	131	Right-handed alpha
Helix 34	AD7	K	186	192	Right-handed alpha

There are 48 sheets in PDB entry 6P60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	69	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	116	120	parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	34	40	anti-parallel
Strand 5	A	46	53	anti-parallel
Strand 6	A	59	61	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	116	120	parallel
Strand 3	A	93	99	anti-parallel
Strand 4	A	111	112	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	144	154	anti-parallel
Strand 3	A	185	194	anti-parallel
Strand 4	A	172	174	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	144	154	anti-parallel
Strand 3	A	185	194	anti-parallel
Strand 4	A	178	179	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	163	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	214	219	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	105	109	parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	46	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	105	109	parallel
Strand 3	B	85	93	anti-parallel
Strand 4	B	98	101	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	71	76	anti-parallel
Strand 3	B	63	68	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	176	185	anti-parallel
Strand 4	B	163	165	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	176	185	anti-parallel
Strand 4	B	169	170	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	159	first strand
Strand 2	B	149	154	anti-parallel
Strand 3	B	195	201	anti-parallel
Strand 4	B	204	210	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	116	120	parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	46	53	anti-parallel
Strand 6	C	59	61	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	116	120	parallel
Strand 3	C	93	99	anti-parallel
Strand 4	C	111	112	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	144	154	anti-parallel
Strand 3	C	185	194	anti-parallel
Strand 4	C	172	174	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	144	154	anti-parallel
Strand 3	C	185	194	anti-parallel
Strand 4	C	178	179	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	163	first strand
Strand 2	C	203	209	anti-parallel
Strand 3	C	214	220	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	49	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	105	109	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	98	101	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	71	76	anti-parallel
Strand 3	D	63	68	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	176	185	anti-parallel
Strand 4	D	163	165	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	133	143	anti-parallel
Strand 3	D	176	185	anti-parallel
Strand 4	D	169	170	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	159	first strand
Strand 2	D	149	154	anti-parallel
Strand 3	D	195	201	anti-parallel
Strand 4	D	204	210	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	116	120	parallel
Strand 3	G	93	99	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	46	53	anti-parallel
Strand 6	G	59	61	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	116	120	parallel
Strand 3	G	93	99	anti-parallel
Strand 4	G	111	112	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	144	154	anti-parallel
Strand 3	G	185	194	anti-parallel
Strand 4	G	172	174	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	144	154	anti-parallel
Strand 3	G	185	194	anti-parallel
Strand 4	G	178	179	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	163	first strand
Strand 2	G	203	209	anti-parallel
Strand 3	G	214	220	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	85	93	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	46	49	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	105	109	parallel
Strand 3	H	85	93	anti-parallel
Strand 4	H	98	101	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	23	first strand
Strand 2	H	71	76	anti-parallel
Strand 3	H	63	68	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	133	143	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	163	165	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	133	143	anti-parallel
Strand 3	H	176	185	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	159	first strand
Strand 2	H	149	154	anti-parallel
Strand 3	H	195	201	anti-parallel
Strand 4	H	204	210	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	79	84	anti-parallel
Strand 4	J	69	74	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	116	120	parallel
Strand 3	J	93	99	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	46	53	anti-parallel
Strand 6	J	59	61	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	116	120	parallel
Strand 3	J	93	99	anti-parallel
Strand 4	J	111	112	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	129	133	first strand
Strand 2	J	144	154	anti-parallel
Strand 3	J	185	194	anti-parallel
Strand 4	J	172	174	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	129	133	first strand
Strand 2	J	144	154	anti-parallel
Strand 3	J	185	194	anti-parallel
Strand 4	J	178	179	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	160	163	first strand
Strand 2	J	203	209	anti-parallel
Strand 3	J	214	220	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	12	first strand
Strand 2	K	105	109	parallel
Strand 3	K	85	93	anti-parallel
Strand 4	K	35	39	anti-parallel
Strand 5	K	46	49	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	9	12	first strand
Strand 2	K	105	109	parallel
Strand 3	K	85	93	anti-parallel
Strand 4	K	98	101	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	23	first strand
Strand 2	K	71	76	anti-parallel
Strand 3	K	63	68	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	122	first strand
Strand 2	K	133	143	anti-parallel
Strand 3	K	176	185	anti-parallel
Strand 4	K	163	165	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	118	122	first strand
Strand 2	K	133	143	anti-parallel
Strand 3	K	176	185	anti-parallel
Strand 4	K	169	170	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	157	158	first strand
Strand 2	K	149	154	anti-parallel
Strand 3	K	195	201	anti-parallel
Strand 4	K	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P60

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P60