Analysis of interatomic Contacts of Structural Units in PDB entry:
6P62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P62 entry

There are 9 chains in PDB entry 6P62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 36	GLU 657
H	GLN 2	THR 110
L	ASP 1	VAL 106
B	VAL 36	GLU 657
C	GLN 2	THR 110
D	ASP 1	VAL 106
E	VAL 36	GLU 657
F	GLN 2	THR 110
G	ASP 1	VAL 106

There are 51 helices in PDB entry 6P62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	117	Right-handed alpha
Helix 2	AA2	A	195	198	Right-handed 310
Helix 3	AA3	A	334	354	Right-handed alpha
Helix 4	AA4	A	425	429	Right-handed 310
Helix 5	AA5	A	476	484	Right-handed alpha
Helix 6	AA6	A	523	528	Right-handed 310
Helix 7	AA7	A	529	534	Right-handed alpha
Helix 8	AA8	A	536	546	Right-handed alpha
Helix 9	AA9	A	572	596	Right-handed alpha
Helix 10	AB1	A	611	615	Right-handed 310
Helix 11	AB2	A	618	624	Right-handed alpha
Helix 12	AB3	A	627	636	Right-handed alpha
Helix 13	AB4	A	638	649	Right-handed alpha
Helix 14	AB5	A	652	657	Right-handed 310
Helix 15	AB6	H	61	64	Right-handed 310
Helix 16	AB7	H	83	87	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	B	98	117	Right-handed alpha
Helix 19	AC1	B	195	198	Right-handed 310
Helix 20	AC2	B	334	354	Right-handed alpha
Helix 21	AC3	B	425	429	Right-handed 310
Helix 22	AC4	B	476	484	Right-handed alpha
Helix 23	AC5	B	523	528	Right-handed 310
Helix 24	AC6	B	529	534	Right-handed alpha
Helix 25	AC7	B	536	546	Right-handed alpha
Helix 26	AC8	B	572	596	Right-handed alpha
Helix 27	AC9	B	611	615	Right-handed 310
Helix 28	AD1	B	618	624	Right-handed alpha
Helix 29	AD2	B	627	636	Right-handed alpha
Helix 30	AD3	B	638	649	Right-handed alpha
Helix 31	AD4	B	652	657	Right-handed 310
Helix 32	AD5	C	61	64	Right-handed 310
Helix 33	AD6	C	83	87	Right-handed 310
Helix 34	AD7	D	79	83	Right-handed 310
Helix 35	AD8	E	98	117	Right-handed alpha
Helix 36	AD9	E	195	198	Right-handed 310
Helix 37	AE1	E	334	354	Right-handed alpha
Helix 38	AE2	E	425	429	Right-handed 310
Helix 39	AE3	E	476	484	Right-handed alpha
Helix 40	AE4	E	523	528	Right-handed 310
Helix 41	AE5	E	529	534	Right-handed alpha
Helix 42	AE6	E	536	546	Right-handed alpha
Helix 43	AE7	E	572	596	Right-handed alpha
Helix 44	AE8	E	611	615	Right-handed 310
Helix 45	AE9	E	618	624	Right-handed alpha
Helix 46	AF1	E	627	636	Right-handed alpha
Helix 47	AF2	E	638	649	Right-handed alpha
Helix 48	AF3	E	652	657	Right-handed 310
Helix 49	AF4	F	61	64	Right-handed 310
Helix 50	AF5	F	83	87	Right-handed 310
Helix 51	AF6	G	79	83	Right-handed 310

There are 45 sheets in PDB entry 6P62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	497	first strand
Strand 2	A	37	39	anti-parallel
Strand 3	A	603	605	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	53	56	parallel
Strand 3	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	201	203	anti-parallel
Strand 3	A	434	435	parallel
Strand 4	A	423	424	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	395	first strand
Strand 2	A	359	361	anti-parallel
Strand 3	A	466	470	parallel
Strand 4	A	441	456	anti-parallel
Strand 5	A	284	312	anti-parallel
Strand 6	A	329	333	anti-parallel
Strand 7	A	414	420	anti-parallel
Strand 8	A	381	385	anti-parallel
Strand 9	A	374	378	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	441	456	anti-parallel
Strand 3	A	284	312	anti-parallel
Strand 4	A	271	273	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	284	312	anti-parallel
Strand 3	A	271	273	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	107	109	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	66	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	84	86	anti-parallel
Strand 4	L	36	38	anti-parallel
Strand 5	L	45	46	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	49	first strand
Strand 2	L	53	54	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	497	first strand
Strand 2	B	37	39	anti-parallel
Strand 3	B	603	605	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	486	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	83	86	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	53	56	parallel
Strand 3	B	216	218	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	236	239	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	122	first strand
Strand 2	B	201	203	anti-parallel
Strand 3	B	434	435	parallel
Strand 4	B	423	424	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	177	first strand
Strand 2	B	154	162	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	190	193	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	395	first strand
Strand 2	B	359	361	anti-parallel
Strand 3	B	466	470	parallel
Strand 4	B	441	456	anti-parallel
Strand 5	B	284	312	anti-parallel
Strand 6	B	329	333	anti-parallel
Strand 7	B	414	420	anti-parallel
Strand 8	B	381	385	anti-parallel
Strand 9	B	374	378	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	441	456	anti-parallel
Strand 3	B	284	312	anti-parallel
Strand 4	B	271	273	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	323	first strand
Strand 2	B	284	312	anti-parallel
Strand 3	B	271	273	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	67	71	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	88	96	anti-parallel
Strand 5	C	100	103	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	88	96	anti-parallel
Strand 5	C	107	109	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	66	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	102	105	parallel
Strand 3	D	84	86	anti-parallel
Strand 4	D	36	38	anti-parallel
Strand 5	D	45	46	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	49	first strand
Strand 2	D	53	54	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	497	first strand
Strand 2	E	37	39	anti-parallel
Strand 3	E	603	605	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	83	86	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	53	56	parallel
Strand 3	E	216	218	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	122	first strand
Strand 2	E	201	203	anti-parallel
Strand 3	E	434	435	parallel
Strand 4	E	423	424	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	190	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 9 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	395	first strand
Strand 2	E	359	361	anti-parallel
Strand 3	E	466	470	parallel
Strand 4	E	441	456	anti-parallel
Strand 5	E	284	312	anti-parallel
Strand 6	E	329	333	anti-parallel
Strand 7	E	414	420	anti-parallel
Strand 8	E	381	385	anti-parallel
Strand 9	E	374	378	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	441	456	anti-parallel
Strand 3	E	284	312	anti-parallel
Strand 4	E	271	273	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	315	323	first strand
Strand 2	E	284	312	anti-parallel
Strand 3	E	271	273	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	76	81	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	45	52	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	88	96	anti-parallel
Strand 5	F	100	103	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	45	52	anti-parallel
Strand 3	F	33	39	anti-parallel
Strand 4	F	88	96	anti-parallel
Strand 5	F	107	109	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	66	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	84	86	anti-parallel
Strand 4	G	36	38	anti-parallel
Strand 5	G	45	46	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	53	54	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P62

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P62