Analysis of interatomic Contacts of Structural Units in PDB entry:
6P65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P65 entry

There are 9 chains in PDB entry 6P65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	CYS 663
H	GLN 2	SER 112
L	ILE 2	LYS 107
B	LEU 34	CYS 663
C	GLN 2	SER 112
D	ILE 2	LYS 107
E	LEU 34	CYS 663
F	GLN 2	SER 112
G	ILE 2	LYS 107

There are 51 helices in PDB entry 6P65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	117	Right-handed alpha
Helix 2	AA2	A	122	126	Right-handed 310
Helix 3	AA3	A	335	353	Right-handed alpha
Helix 4	AA4	A	368	373	Right-handed alpha
Helix 5	AA5	A	427	429	Right-handed 310
Helix 6	AA6	A	476	484	Right-handed alpha
Helix 7	AA7	A	529	541	Right-handed alpha
Helix 8	AA8	A	542	548	Right-handed 310
Helix 9	AA9	A	568	568	Right-handed 310
Helix 10	AB1	A	569	596	Right-handed alpha
Helix 11	AB2	A	618	624	Right-handed alpha
Helix 12	AB3	A	627	635	Right-handed alpha
Helix 13	AB4	A	638	649	Right-handed alpha
Helix 14	AB5	A	649	660	Right-handed alpha
Helix 15	AB6	A	661	663	Right-handed 310
Helix 16	AB7	H	59	64	Right-handed alpha
Helix 17	AB8	H	83	87	Right-handed 310
Helix 18	AB9	B	98	117	Right-handed alpha
Helix 19	AC1	B	122	126	Right-handed 310
Helix 20	AC2	B	335	353	Right-handed alpha
Helix 21	AC3	B	368	373	Right-handed alpha
Helix 22	AC4	B	427	429	Right-handed 310
Helix 23	AC5	B	476	484	Right-handed alpha
Helix 24	AC6	B	529	541	Right-handed alpha
Helix 25	AC7	B	542	548	Right-handed 310
Helix 26	AC8	B	568	568	Right-handed 310
Helix 27	AC9	B	569	596	Right-handed alpha
Helix 28	AD1	B	618	624	Right-handed alpha
Helix 29	AD2	B	627	635	Right-handed alpha
Helix 30	AD3	B	638	649	Right-handed alpha
Helix 31	AD4	B	649	660	Right-handed alpha
Helix 32	AD5	B	661	663	Right-handed 310
Helix 33	AD6	C	59	64	Right-handed alpha
Helix 34	AD7	C	83	87	Right-handed 310
Helix 35	AD8	E	98	117	Right-handed alpha
Helix 36	AD9	E	122	126	Right-handed 310
Helix 37	AE1	E	335	353	Right-handed alpha
Helix 38	AE2	E	368	373	Right-handed alpha
Helix 39	AE3	E	427	429	Right-handed 310
Helix 40	AE4	E	476	484	Right-handed alpha
Helix 41	AE5	E	529	541	Right-handed alpha
Helix 42	AE6	E	542	548	Right-handed 310
Helix 43	AE7	E	568	568	Right-handed 310
Helix 44	AE8	E	569	596	Right-handed alpha
Helix 45	AE9	E	618	624	Right-handed alpha
Helix 46	AF1	E	627	635	Right-handed alpha
Helix 47	AF2	E	638	649	Right-handed alpha
Helix 48	AF3	E	649	660	Right-handed alpha
Helix 49	AF4	E	661	663	Right-handed 310
Helix 50	AF5	F	59	64	Right-handed alpha
Helix 51	AF6	F	83	87	Right-handed 310

There are 39 sheets in PDB entry 6P65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	499	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	188	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	425	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	444	456	anti-parallel
Strand 3	A	283	297	anti-parallel
Strand 4	A	329	334	anti-parallel
Strand 5	A	413	420	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	283	297	anti-parallel
Strand 3	A	444	456	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	357	361	parallel
Strand 6	A	393	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	312	first strand
Strand 2	A	315	321	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	58	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	89	99	anti-parallel
Strand 5	H	100	103	anti-parallel
Strand 6	L	85	93	anti-parallel
Strand 7	L	33	38	anti-parallel
Strand 8	L	45	49	anti-parallel
Strand 9	L	53	54	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	85	93	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	18	25	anti-parallel
Strand 3	L	70	76	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	499	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	486	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	84	86	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	216	218	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	94	first strand
Strand 2	B	236	239	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	177	first strand
Strand 2	B	154	162	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	188	193	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	433	435	parallel
Strand 3	B	423	425	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	444	456	anti-parallel
Strand 3	B	283	297	anti-parallel
Strand 4	B	329	334	anti-parallel
Strand 5	B	413	420	anti-parallel
Strand 6	B	381	385	anti-parallel
Strand 7	B	374	378	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	283	297	anti-parallel
Strand 3	B	444	456	anti-parallel
Strand 4	B	465	470	anti-parallel
Strand 5	B	357	361	parallel
Strand 6	B	393	395	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	312	first strand
Strand 2	B	315	321	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	67	71	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	58	first strand
Strand 2	C	45	52	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	89	99	anti-parallel
Strand 5	C	100	103	anti-parallel
Strand 6	D	85	93	anti-parallel
Strand 7	D	33	38	anti-parallel
Strand 8	D	45	49	anti-parallel
Strand 9	D	53	54	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	85	93	anti-parallel
Strand 4	D	95	98	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	70	76	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	603	609	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	223	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	86	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	55	first strand
Strand 2	E	216	218	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	177	first strand
Strand 2	E	154	162	anti-parallel
Strand 3	E	129	133	anti-parallel
Strand 4	E	188	193	anti-parallel
Strand 5	E	181	183	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	203	first strand
Strand 2	E	433	435	parallel
Strand 3	E	423	425	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	261	first strand
Strand 2	E	444	456	anti-parallel
Strand 3	E	283	297	anti-parallel
Strand 4	E	329	334	anti-parallel
Strand 5	E	413	420	anti-parallel
Strand 6	E	381	385	anti-parallel
Strand 7	E	374	378	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	283	297	anti-parallel
Strand 3	E	444	456	anti-parallel
Strand 4	E	465	470	anti-parallel
Strand 5	E	357	361	parallel
Strand 6	E	393	395	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	312	first strand
Strand 2	E	315	321	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	76	81	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 9 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	45	52	anti-parallel
Strand 3	F	34	39	anti-parallel
Strand 4	F	89	99	anti-parallel
Strand 5	F	100	103	anti-parallel
Strand 6	G	85	93	anti-parallel
Strand 7	G	33	38	anti-parallel
Strand 8	G	45	49	anti-parallel
Strand 9	G	53	54	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	102	107	parallel
Strand 3	G	85	93	anti-parallel
Strand 4	G	95	98	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	70	76	anti-parallel
Strand 4	G	62	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P65

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P65