Analysis of interatomic Contacts of Structural Units in PDB entry:
6P66

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P66 entry

There are 4 chains in PDB entry 6P66 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 3	LYS 445
B	MET 1	THR 467
C	SER -16	ARG 443
D	MET 1	ARG 24

There are 77 helices in PDB entry 6P66. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	51	Right-handed alpha
Helix 2	AA2	A	75	89	Right-handed alpha
Helix 3	AA3	A	97	113	Right-handed alpha
Helix 4	AA4	A	122	133	Right-handed alpha
Helix 5	AA5	A	134	139	Right-handed 310
Helix 6	AA6	A	159	165	Right-handed alpha
Helix 7	AA7	A	165	170	Right-handed alpha
Helix 8	AA8	A	171	173	Right-handed 310
Helix 9	AA9	A	181	184	Right-handed 310
Helix 10	AB1	A	189	195	Right-handed alpha
Helix 11	AB2	A	214	222	Right-handed alpha
Helix 12	AB3	A	230	235	Right-handed alpha
Helix 13	AB4	A	252	274	Right-handed alpha
Helix 14	AB5	A	281	291	Right-handed alpha
Helix 15	AB6	A	294	312	Right-handed alpha
Helix 16	AB7	A	313	327	Right-handed alpha
Helix 17	AB8	A	338	350	Right-handed alpha
Helix 18	AB9	A	359	372	Right-handed alpha
Helix 19	AC1	A	406	415	Right-handed alpha
Helix 20	AC2	B	22	24	Right-handed 310
Helix 21	AC3	B	25	39	Right-handed alpha
Helix 22	AC4	B	43	54	Right-handed alpha
Helix 23	AC5	B	59	77	Right-handed alpha
Helix 24	AC6	B	88	99	Right-handed alpha
Helix 25	AC7	B	104	119	Right-handed alpha
Helix 26	AC8	B	122	130	Right-handed alpha
Helix 27	AC9	B	134	138	Right-handed 310
Helix 28	AD1	B	147	166	Right-handed alpha
Helix 29	AD2	B	177	189	Right-handed alpha
Helix 30	AD3	B	218	223	Right-handed alpha
Helix 31	AD4	B	225	230	Right-handed alpha
Helix 32	AD5	B	255	260	Right-handed 310
Helix 33	AD6	B	274	286	Right-handed alpha
Helix 34	AD7	B	324	338	Right-handed alpha
Helix 35	AD8	B	370	377	Right-handed alpha
Helix 36	AD9	B	411	425	Right-handed alpha
Helix 37	AE1	B	429	439	Right-handed alpha
Helix 38	AE2	B	443	447	Right-handed 310
Helix 39	AE3	C	40	51	Right-handed alpha
Helix 40	AE4	C	75	89	Right-handed alpha
Helix 41	AE5	C	97	113	Right-handed alpha
Helix 42	AE6	C	122	134	Right-handed alpha
Helix 43	AE7	C	135	139	Right-handed 310
Helix 44	AE8	C	159	165	Right-handed alpha
Helix 45	AE9	C	181	184	Right-handed 310
Helix 46	AF1	C	189	195	Right-handed alpha
Helix 47	AF2	C	214	222	Right-handed alpha
Helix 48	AF3	C	252	273	Right-handed alpha
Helix 49	AF4	C	279	281	Right-handed 310
Helix 50	AF5	C	282	287	Right-handed alpha
Helix 51	AF6	C	295	312	Right-handed alpha
Helix 52	AF7	C	313	326	Right-handed alpha
Helix 53	AF8	C	338	350	Right-handed alpha
Helix 54	AF9	C	359	372	Right-handed alpha
Helix 55	AG1	C	405	416	Right-handed alpha
Helix 56	AG2	D	3	7	Right-handed 310
Helix 57	AG3	D	22	24	Right-handed 310
Helix 58	AG4	D	25	39	Right-handed alpha
Helix 59	AG5	D	43	53	Right-handed alpha
Helix 60	AG6	D	59	77	Right-handed alpha
Helix 61	AG7	D	88	99	Right-handed alpha
Helix 62	AG8	D	104	118	Right-handed alpha
Helix 63	AG9	D	122	129	Right-handed alpha
Helix 64	AH1	D	147	166	Right-handed alpha
Helix 65	AH2	D	177	188	Right-handed alpha
Helix 66	AH3	D	208	211	Right-handed 310
Helix 67	AH4	D	214	224	Right-handed alpha
Helix 68	AH5	D	225	231	Right-handed alpha
Helix 69	AH6	D	255	260	Right-handed 310
Helix 70	AH7	D	270	284	Right-handed alpha
Helix 71	AH8	D	285	287	Right-handed 310
Helix 72	AH9	D	324	338	Right-handed alpha
Helix 73	AI1	D	368	378	Right-handed alpha
Helix 74	AI2	D	382	387	Right-handed alpha
Helix 75	AI3	D	411	426	Right-handed alpha
Helix 76	AI4	D	429	439	Right-handed alpha
Helix 77	AI5	D	443	447	Right-handed 310

There are 18 sheets in PDB entry 6P66. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	33	37	anti-parallel
Strand 3	A	13	17	anti-parallel
Strand 4	A	5	10	anti-parallel
Strand 5	A	55	58	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	154	158	parallel
Strand 3	A	116	120	parallel
Strand 4	A	175	179	parallel
Strand 5	A	200	205	parallel
Strand 6	A	90	94	parallel
Strand 7	A	225	228	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	425	432	parallel
Strand 3	A	246	249	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	425	432	parallel
Strand 3	A	395	398	parallel
Strand 4	A	332	335	parallel
Strand 5	A	377	380	parallel
Strand 6	A	353	354	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	16	18	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	139	143	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	195	first strand
Strand 2	B	204	208	anti-parallel
Strand 3	B	167	172	anti-parallel
Strand 4	B	236	241	anti-parallel
Strand 5	B	248	253	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	309	first strand
Strand 2	B	314	318	anti-parallel
Strand 3	B	343	344	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	456	first strand
Strand 2	D	462	466	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	466	first strand
Strand 2	D	452	454	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-7	-3	first strand
Strand 2	C	0	10	anti-parallel
Strand 3	C	13	17	anti-parallel
Strand 4	C	34	37	anti-parallel
Strand 5	C	26	27	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	-7	-3	first strand
Strand 2	C	0	10	anti-parallel
Strand 3	C	55	58	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	242	251	anti-parallel
Strand 3	C	425	435	parallel
Strand 4	C	395	399	parallel
Strand 5	C	332	335	parallel
Strand 6	C	377	380	parallel
Strand 7	C	353	354	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	144	first strand
Strand 2	C	154	158	parallel
Strand 3	C	116	120	parallel
Strand 4	C	175	179	parallel
Strand 5	C	200	205	parallel
Strand 6	C	90	94	parallel
Strand 7	C	225	227	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	15	18	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	82	first strand
Strand 2	D	139	143	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	197	first strand
Strand 2	D	200	206	anti-parallel
Strand 3	D	167	174	anti-parallel
Strand 4	D	235	242	anti-parallel
Strand 5	D	247	253	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	291	first strand
Strand 2	D	306	309	anti-parallel
Strand 3	D	314	319	anti-parallel
Strand 4	D	342	347	parallel
Strand 5	D	361	364	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P66

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P66