Analysis of interatomic Contacts of Structural Units in PDB entry:
6P6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P6J entry

There are 2 chains in PDB entry 6P6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 17PRO 587
B
 ALA 11ALA 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6P6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 58Right-handed alpha
Helix 2
AA2
A
64 109Right-handed alpha
Helix 3
AA3
A
111 122Right-handed alpha
Helix 4
AA4
A
122 139Right-handed alpha
Helix 5
AA5
A
141 163Right-handed alpha
Helix 6
AA6
A
166 188Right-handed alpha
Helix 7
AA7
A
190 220Right-handed alpha
Helix 8
AA8
A
222 258Right-handed alpha
Helix 9
AA9
A
259 277Right-handed alpha
Helix 10
AB1
A
281 300Right-handed alpha
Helix 11
AB2
A
301 303Right-handed 310
Helix 12
AB3
A
304 324Right-handed alpha
Helix 13
AB4
A
384 391Right-handed alpha
Helix 14
AB5
A
412 419Right-handed alpha
Helix 15
AB6
A
446 454Right-handed alpha
Helix 16
AB7
A
459 465Right-handed alpha
Helix 17
AB8
A
468 472Right-handed 310
Helix 18
AB9
A
483 498Right-handed alpha
Helix 19
AC1
A
512 527Right-handed alpha
Helix 20
AC2
A
561 569Right-handed alpha
Helix 21
AC3
A
570 584Right-handed alpha
Helix 22
AC4
B
12 23Right-handed alpha
Helix 23
AC5
B
26 59Right-handed alpha
Helix 24
AC6
B
62 94Right-handed alpha
Helix 25
AC7
B
94 114Right-handed alpha
Helix 26
AC8
B
115 122Right-handed alpha
Helix 27
AC9
B
122 136Right-handed alpha
Helix 28
AD1
B
137 140Right-handed 310
Helix 29
AD2
B
141 147Right-handed alpha
Helix 30
AD3
B
147 167Right-handed alpha
Helix 31
AD4
B
168 178Right-handed alpha
Helix 32
AD5
B
180 187Right-handed alpha
Helix 33
AD6
B
188 216Right-handed alpha
Helix 34
AD7
B
216 223Right-handed alpha
Helix 35
AD8
B
225 251Right-handed alpha
Helix 36
AD9
B
251 260Right-handed alpha
Helix 37
AE1
B
260 279Right-handed alpha
Helix 38
AE2
B
285 295Right-handed alpha
Helix 39
AE3
B
297 325Right-handed alpha
Helix 40
AE4
B
354 358Right-handed 310
Helix 41
AE5
B
385 391Right-handed alpha
Helix 42
AE6
B
410 412Right-handed 310
Helix 43
AE7
B
413 419Right-handed alpha
Helix 44
AE8
B
434 441Right-handed alpha
Helix 45
AE9
B
447 458Right-handed alpha
Helix 46
AF1
B
460 467Right-handed alpha
Helix 47
AF2
B
483 498Right-handed alpha
Helix 48
AF3
B
514 528Right-handed alpha
Helix 49
AF4
B
539 545Right-handed alpha
Helix 50
AF5
B
562 567Right-handed alpha
Helix 51
AF6
B
571 578Right-handed alpha
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There are 5 sheets in PDB entry 6P6J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
359 367first strand
Strand 2
A
342 350anti-parallel
Strand 3
A
400 403anti-parallel
Strand 4
A
406 407anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 422first strand
Strand 2
A
501 504parallel
Strand 3
A
531 535parallel
Strand 4
A
373 376parallel
Strand 5
A
547 552parallel
Strand 6
A
555 556anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 364first strand
Strand 2
B
344 351anti-parallel
Strand 3
B
367 368anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 364first strand
Strand 2
B
344 351anti-parallel
Strand 3
B
399 404anti-parallel
Strand 4
B
407 408anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 424first strand
Strand 2
B
502 505parallel
Strand 3
B
532 535parallel
Strand 4
B
373 378parallel
Strand 5
B
548 552parallel
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