Analysis of interatomic Contacts of Structural Units in PDB entry:
6P78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P78 entry

There are 2 chains in PDB entry 6P78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PRO 153
A
 LEU 155ASP 229
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6P78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 37Right-handed 310
Helix 2
AA2
A
40 53Right-handed alpha
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
74 88Right-handed alpha
Helix 5
AA5
A
98 103Right-handed 310
Helix 6
AA6
A
104 113Right-handed alpha
Helix 7
AA7
A
126 133Right-handed alpha
Helix 8
AA8
A
142 148Right-handed alpha
Helix 9
AA9
A
163 178Right-handed alpha
Helix 10
AB1
A
196 207Right-handed alpha
Helix 11
AB2
A
207 212Right-handed alpha
Helix 12
AB3
A
221 226Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6P78.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
61 65parallel
Strand 4
A
92 96parallel
Strand 5
A
115 123parallel
Strand 6
A
152 157parallel
Strand 7
A
181 185parallel
Strand 8
A
216 219parallel
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