Analysis of interatomic Contacts of Structural Units in PDB entry:
6P7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P7M entry

There are 3 chains in PDB entry 6P7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 1226
B
 A 1 G 26
C
 ILE 136HIS 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6P7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 33Right-handed alpha
Helix 3
AA3
A
38 66Right-handed alpha
Helix 4
AA4
A
73 82Right-handed alpha
Helix 5
AA5
A
94 110Right-handed alpha
Helix 6
AA6
A
114 120Right-handed 310
Helix 7
AA7
A
121 126Right-handed alpha
Helix 8
AA8
A
127 132Right-handed alpha
Helix 9
AA9
A
136 144Right-handed alpha
Helix 10
AB1
A
147 150Right-handed 310
Helix 11
AB2
A
151 159Right-handed alpha
Helix 12
AB3
A
170 178Right-handed alpha
Helix 13
AB4
A
179 193Right-handed alpha
Helix 14
AB5
A
201 211Right-handed alpha
Helix 15
AB6
A
216 221Right-handed 310
Helix 16
AB7
A
230 243Right-handed alpha
Helix 17
AB8
A
254 266Right-handed alpha
Helix 18
AB9
A
296 309Right-handed alpha
Helix 19
AC1
A
312 327Right-handed alpha
Helix 20
AC2
A
341 352Right-handed alpha
Helix 21
AC3
A
357 371Right-handed alpha
Helix 22
AC4
A
378 392Right-handed alpha
Helix 23
AC5
A
397 403Right-handed alpha
Helix 24
AC6
A
409 431Right-handed alpha
Helix 25
AC7
A
450 471Right-handed alpha
Helix 26
AC8
A
483 498Right-handed alpha
Helix 27
AC9
A
499 512Right-handed alpha
Helix 28
AD1
A
686 697Right-handed alpha
Helix 29
AD2
A
718 728Right-handed alpha
Helix 30
AD3
A
786 791Right-handed 310
Helix 31
AD4
A
811 822Right-handed alpha
Helix 32
AD5
A
872 886Right-handed alpha
Helix 33
AD6
A
890 919Right-handed alpha
Helix 34
AD7
A
939 955Right-handed alpha
Helix 35
AD8
A
969 973Right-handed 310
Helix 36
AD9
A
1020 1030Right-handed alpha
Helix 37
AE1
A
1048 1052Right-handed 310
Helix 38
AE2
A
1091 1102Right-handed alpha
Helix 39
AE3
A
1111 1116Right-handed alpha
Helix 40
AE4
A
1120 1135Right-handed alpha
Helix 41
AE5
A
1163 1167Right-handed 310
Helix 42
AE6
A
1178 1201Right-handed alpha
Helix 43
AE7
A
1205 1209Right-handed 310
Helix 44
AE8
A
1214 1225Right-handed alpha
Helix 45
AE9
C
137 148Right-handed alpha
Helix 46
AF1
C
151 155Right-handed 310
Helix 47
AF2
C
200 204Right-handed 310
Helix 48
AF3
C
229 233Right-handed 310
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There are 10 sheets in PDB entry 6P7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
552 556anti-parallel
Strand 3
A
702 705anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
794 802anti-parallel
Strand 6
A
736 737anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
552 556anti-parallel
Strand 3
A
702 705anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
794 802anti-parallel
Strand 6
A
743 744anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
394 396anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 784first strand
Strand 2
A
757 759anti-parallel
Strand 3
C
179 188anti-parallel
Strand 4
C
194 198anti-parallel
Strand 5
C
206 207anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
783 784first strand
Strand 2
A
757 759anti-parallel
Strand 3
C
179 188anti-parallel
Strand 4
C
157 159anti-parallel
Strand 5
C
212 215anti-parallel
Strand 6
C
220 223anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 766first strand
Strand 2
A
776 777anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
850 855first strand
Strand 2
A
840 844anti-parallel
Strand 3
A
828 832anti-parallel
Strand 4
A
922 925parallel
Strand 5
A
993 996parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 863first strand
Strand 2
A
866 871anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1042 1046anti-parallel
Strand 3
A
1064 1065anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1070 1073first strand
Strand 2
A
1087 1090anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il