Analysis of interatomic Contacts of Structural Units in PDB entry:
6P7O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P7O entry

There is 1 chain in PDB entry 6P7O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 4ALA 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 6P7O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 22Right-handed alpha
Helix 2
AA2
A
38 50Right-handed alpha
Helix 3
AA3
A
110 126Right-handed alpha
Helix 4
AA4
A
165 173Right-handed alpha
Helix 5
AA5
A
208 222Right-handed alpha
Helix 6
AA6
A
231 237Right-handed alpha
Helix 7
AA7
A
238 240Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 6P7O. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
91 95anti-parallel
Strand 3
A
54 62parallel
Strand 4
A
72 78anti-parallel
Strand 5
A
99 109anti-parallel
Strand 6
A
150 158parallel
Strand 7
A
183 186parallel
Strand 8
A
190 195anti-parallel
Strand 9
A
200 205anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
140 141anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il