Analysis of interatomic Contacts of Structural Units in PDB entry:
6P7U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P7U entry

There are 4 chains in PDB entry 6P7U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 13	GLY 466
B	LEU 13	GLY 466
C	LEU 13	GLY 466
D	LEU 13	GLN 113

There are 85 helices in PDB entry 6P7U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	16	Right-handed 310
Helix 2	AA2	A	17	26	Right-handed alpha
Helix 3	AA3	A	63	67	Right-handed 310
Helix 4	AA4	A	69	87	Right-handed alpha
Helix 5	AA5	A	100	103	Right-handed 310
Helix 6	AA6	A	104	122	Right-handed alpha
Helix 7	AA7	A	137	146	Right-handed alpha
Helix 8	AA8	A	197	214	Right-handed alpha
Helix 9	AA9	A	219	226	Right-handed alpha
Helix 10	AB1	A	229	234	Right-handed 310
Helix 11	AB2	A	244	252	Right-handed alpha
Helix 12	AB3	A	290	294	Right-handed 310
Helix 13	AB4	A	296	314	Right-handed alpha
Helix 14	AB5	A	334	351	Right-handed alpha
Helix 15	AB6	A	365	371	Right-handed alpha
Helix 16	AB7	A	373	377	Right-handed 310
Helix 17	AB8	A	393	402	Right-handed alpha
Helix 18	AB9	A	402	409	Right-handed alpha
Helix 19	AC1	A	415	429	Right-handed alpha
Helix 20	AC2	A	431	439	Right-handed alpha
Helix 21	AC3	A	446	448	Right-handed 310
Helix 22	AC4	A	449	461	Right-handed alpha
Helix 23	AC5	B	17	26	Right-handed alpha
Helix 24	AC6	B	63	67	Right-handed 310
Helix 25	AC7	B	69	87	Right-handed alpha
Helix 26	AC8	B	100	102	Right-handed 310
Helix 27	AC9	B	103	122	Right-handed alpha
Helix 28	AD1	B	137	145	Right-handed alpha
Helix 29	AD2	B	197	214	Right-handed alpha
Helix 30	AD3	B	219	226	Right-handed alpha
Helix 31	AD4	B	229	234	Right-handed 310
Helix 32	AD5	B	244	252	Right-handed alpha
Helix 33	AD6	B	290	294	Right-handed 310
Helix 34	AD7	B	296	314	Right-handed alpha
Helix 35	AD8	B	334	350	Right-handed alpha
Helix 36	AD9	B	365	371	Right-handed alpha
Helix 37	AE1	B	373	377	Right-handed 310
Helix 38	AE2	B	393	402	Right-handed alpha
Helix 39	AE3	B	402	409	Right-handed alpha
Helix 40	AE4	B	410	426	Right-handed alpha
Helix 41	AE5	B	431	439	Right-handed alpha
Helix 42	AE6	B	446	448	Right-handed 310
Helix 43	AE7	B	449	461	Right-handed alpha
Helix 44	AE8	C	13	16	Right-handed 310
Helix 45	AE9	C	17	26	Right-handed alpha
Helix 46	AF1	C	63	67	Right-handed 310
Helix 47	AF2	C	69	87	Right-handed alpha
Helix 48	AF3	C	100	102	Right-handed 310
Helix 49	AF4	C	103	122	Right-handed alpha
Helix 50	AF5	C	137	146	Right-handed alpha
Helix 51	AF6	C	197	214	Right-handed alpha
Helix 52	AF7	C	219	226	Right-handed alpha
Helix 53	AF8	C	229	234	Right-handed 310
Helix 54	AF9	C	244	252	Right-handed alpha
Helix 55	AG1	C	290	294	Right-handed 310
Helix 56	AG2	C	297	313	Right-handed alpha
Helix 57	AG3	C	334	351	Right-handed alpha
Helix 58	AG4	C	365	371	Right-handed alpha
Helix 59	AG5	C	373	377	Right-handed 310
Helix 60	AG6	C	393	402	Right-handed alpha
Helix 61	AG7	C	431	439	Right-handed alpha
Helix 62	AG8	C	446	448	Right-handed 310
Helix 63	AG9	C	449	461	Right-handed alpha
Helix 64	AH1	D	17	26	Right-handed alpha
Helix 65	AH2	D	63	67	Right-handed 310
Helix 66	AH3	D	69	87	Right-handed alpha
Helix 67	AH4	D	100	102	Right-handed 310
Helix 68	AH5	D	103	122	Right-handed alpha
Helix 69	AH6	D	137	145	Right-handed alpha
Helix 70	AH7	D	153	157	Right-handed 310
Helix 71	AH8	D	197	214	Right-handed alpha
Helix 72	AH9	D	219	226	Right-handed alpha
Helix 73	AI1	D	229	234	Right-handed 310
Helix 74	AI2	D	244	252	Right-handed alpha
Helix 75	AI3	D	290	294	Right-handed 310
Helix 76	AI4	D	296	314	Right-handed alpha
Helix 77	AI5	D	334	351	Right-handed alpha
Helix 78	AI6	D	365	371	Right-handed alpha
Helix 79	AI7	D	373	377	Right-handed 310
Helix 80	AI8	D	393	402	Right-handed alpha
Helix 81	AI9	D	402	408	Right-handed alpha
Helix 82	AJ1	D	413	427	Right-handed alpha
Helix 83	AJ2	D	431	439	Right-handed alpha
Helix 84	AJ3	D	446	448	Right-handed 310
Helix 85	AJ4	D	449	460	Right-handed alpha

There are 14 sheets in PDB entry 6P7U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	52	59	anti-parallel
Strand 4	A	90	96	parallel
Strand 5	A	127	136	parallel
Strand 6	A	156	158	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	52	59	anti-parallel
Strand 4	A	90	96	parallel
Strand 5	A	127	136	parallel
Strand 6	A	148	151	parallel
Strand 7	A	193	194	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	269	276	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	317	323	parallel
Strand 5	A	355	364	parallel
Strand 6	A	388	390	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	269	276	anti-parallel
Strand 3	A	279	286	anti-parallel
Strand 4	A	317	323	parallel
Strand 5	A	355	364	parallel
Strand 6	A	380	383	parallel
Strand 7	A	443	444	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	42	49	anti-parallel
Strand 3	B	52	59	anti-parallel
Strand 4	B	90	96	parallel
Strand 5	B	127	135	parallel
Strand 6	B	148	151	parallel
Strand 7	B	193	194	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	269	276	anti-parallel
Strand 3	B	279	286	anti-parallel
Strand 4	B	317	323	parallel
Strand 5	B	355	364	parallel
Strand 6	B	388	390	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	261	first strand
Strand 2	B	269	276	anti-parallel
Strand 3	B	279	286	anti-parallel
Strand 4	B	317	323	parallel
Strand 5	B	355	364	parallel
Strand 6	B	380	383	parallel
Strand 7	B	443	444	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	42	49	anti-parallel
Strand 3	C	52	59	anti-parallel
Strand 4	C	90	96	parallel
Strand 5	C	127	135	parallel
Strand 6	C	148	151	parallel
Strand 7	C	193	194	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	269	276	anti-parallel
Strand 3	C	279	286	anti-parallel
Strand 4	C	317	323	parallel
Strand 5	C	355	364	parallel
Strand 6	C	388	390	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	269	276	anti-parallel
Strand 3	C	279	286	anti-parallel
Strand 4	C	317	323	parallel
Strand 5	C	355	364	parallel
Strand 6	C	380	383	parallel
Strand 7	C	443	444	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	326	327	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	42	49	anti-parallel
Strand 3	D	52	59	anti-parallel
Strand 4	D	90	96	parallel
Strand 5	D	127	135	parallel
Strand 6	D	148	151	parallel
Strand 7	D	193	194	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	269	276	anti-parallel
Strand 3	D	279	286	anti-parallel
Strand 4	D	317	323	parallel
Strand 5	D	355	364	parallel
Strand 6	D	388	390	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	269	276	anti-parallel
Strand 3	D	279	286	anti-parallel
Strand 4	D	317	323	parallel
Strand 5	D	355	364	parallel
Strand 6	D	380	383	parallel
Strand 7	D	443	444	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P7U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P7U