Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8A entry

There are 3 chains in PDB entry 6P8A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3VAL 337
B
 GLY 2GLN 340
C
 GLY 2ASN 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6P8A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 13Right-handed alpha
Helix 2
AA2
A
44 54Right-handed 310
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
78 90Right-handed alpha
Helix 5
AA5
A
310 322Right-handed alpha
Helix 6
AA6
A
322 337Right-handed alpha
Helix 7
AA7
B
6 13Right-handed alpha
Helix 8
AA8
B
44 54Right-handed 310
Helix 9
AA9
B
65 69Right-handed 310
Helix 10
AB1
B
78 90Right-handed alpha
Helix 11
AB2
B
310 322Right-handed alpha
Helix 12
AB3
B
322 338Right-handed alpha
Helix 13
AB4
C
6 13Right-handed alpha
Helix 14
AB5
C
44 54Right-handed 310
Helix 15
AB6
C
65 69Right-handed 310
Helix 16
AB7
C
78 90Right-handed alpha
Helix 17
AB8
C
310 322Right-handed alpha
Helix 18
AB9
C
322 338Right-handed alpha
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There are 18 sheets in PDB entry 6P8A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
24 25anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
72 75anti-parallel
Strand 3
A
58 61parallel
Strand 4
A
38 41parallel
Strand 5
A
27 28parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
123 124parallel
Strand 3
A
141 142parallel
Strand 4
A
159 160parallel
Strand 5
A
177 178parallel
Strand 6
A
214 215parallel
Strand 7
A
236 237parallel
Strand 8
A
254 255parallel
Strand 9
A
272 273parallel
Strand 10
A
290 291parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
129 130parallel
Strand 3
A
147 148parallel
Strand 4
A
165 166parallel
Strand 5
A
201 203parallel
Strand 6
A
223 225parallel
Strand 7
A
242 243parallel
Strand 8
A
260 261parallel
Strand 9
A
278 279parallel
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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
135 136parallel
Strand 3
A
153 154parallel
Strand 4
A
171 172parallel
Strand 5
A
208 209parallel
Strand 6
A
230 231parallel
Strand 7
A
248 249parallel
Strand 8
A
266 267parallel
Strand 9
A
283 285parallel
Strand 10
A
299 302parallel
Strand 11
B
308 309anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
191 194anti-parallel
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There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
C
299 302anti-parallel
Strand 3
C
283 285parallel
Strand 4
C
266 267parallel
Strand 5
C
248 249parallel
Strand 6
C
230 231parallel
Strand 7
C
208 209parallel
Strand 8
C
171 172parallel
Strand 9
C
153 154parallel
Strand 10
C
135 136parallel
Strand 11
C
117 118parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
24 25anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 18first strand
Strand 2
B
72 75anti-parallel
Strand 3
B
58 61parallel
Strand 4
B
38 41parallel
Strand 5
B
27 28parallel
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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
123 124parallel
Strand 3
B
141 142parallel
Strand 4
B
159 160parallel
Strand 5
B
177 178parallel
Strand 6
B
214 215parallel
Strand 7
B
236 237parallel
Strand 8
B
254 255parallel
Strand 9
B
272 273parallel
Strand 10
B
290 291parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 112first strand
Strand 2
B
129 130parallel
Strand 3
B
147 148parallel
Strand 4
B
165 166parallel
Strand 5
B
201 203parallel
Strand 6
B
223 225parallel
Strand 7
B
242 243parallel
Strand 8
B
260 261parallel
Strand 9
B
278 279parallel
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There are 11 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
135 136parallel
Strand 3
B
153 154parallel
Strand 4
B
171 172parallel
Strand 5
B
208 209parallel
Strand 6
B
230 231parallel
Strand 7
B
248 249parallel
Strand 8
B
266 267parallel
Strand 9
B
283 285parallel
Strand 10
B
299 302parallel
Strand 11
C
308 309anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 188first strand
Strand 2
B
191 194anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
24 25anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 18first strand
Strand 2
C
72 75anti-parallel
Strand 3
C
58 61parallel
Strand 4
C
38 41parallel
Strand 5
C
27 28parallel
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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
123 124parallel
Strand 3
C
141 142parallel
Strand 4
C
159 160parallel
Strand 5
C
177 178parallel
Strand 6
C
214 215parallel
Strand 7
C
236 237parallel
Strand 8
C
254 255parallel
Strand 9
C
272 273parallel
Strand 10
C
290 291parallel
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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 112first strand
Strand 2
C
129 130parallel
Strand 3
C
147 148parallel
Strand 4
C
165 166parallel
Strand 5
C
201 203parallel
Strand 6
C
223 225parallel
Strand 7
C
242 243parallel
Strand 8
C
260 261parallel
Strand 9
C
278 279parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 188first strand
Strand 2
C
191 194anti-parallel
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