Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8D entry

There are 6 chains in PDB entry 6P8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1ASP 216
B
 ASP 1ARG 211
D
 GLN 1ASP 216
E
 ASP 1ARG 211
F
 ALA 156PHE 163
C
 ALA 42PHE 49
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6P8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 65Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
202 204Right-handed 310
Helix 4
AA4
B
79 83Right-handed 310
Helix 5
AA5
B
121 128Right-handed alpha
Helix 6
AA6
B
183 187Right-handed alpha
Helix 7
AA7
D
62 65Right-handed 310
Helix 8
AA8
D
87 91Right-handed 310
Helix 9
AA9
D
202 204Right-handed 310
Helix 10
AB1
E
79 83Right-handed 310
Helix 11
AB2
E
121 128Right-handed alpha
Helix 12
AB3
E
183 187Right-handed alpha
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There are 21 sheets in PDB entry 6P8D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
110 114parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
137 147anti-parallel
Strand 3
A
176 186anti-parallel
Strand 4
A
165 167anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
137 147anti-parallel
Strand 3
A
176 186anti-parallel
Strand 4
A
171 173anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
196 201anti-parallel
Strand 3
A
206 211anti-parallel
Strand 4
D
206 211anti-parallel
Strand 5
D
196 201anti-parallel
Strand 6
D
153 156anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 66anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
33 38anti-parallel
Strand 4
B
84 90anti-parallel
Strand 5
B
97 98anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
33 38anti-parallel
Strand 4
B
84 90anti-parallel
Strand 5
B
102 104anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
129 139anti-parallel
Strand 3
B
173 182anti-parallel
Strand 4
B
159 163anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 155first strand
Strand 2
B
145 150anti-parallel
Strand 3
B
191 197anti-parallel
Strand 4
B
205 210anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 6first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
78 83anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 12first strand
Strand 2
D
110 114parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
34 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
9 12first strand
Strand 2
D
110 114parallel
Strand 3
D
92 98anti-parallel
Strand 4
D
105 106anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 127first strand
Strand 2
D
138 147anti-parallel
Strand 3
D
176 185anti-parallel
Strand 4
D
165 167anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 127first strand
Strand 2
D
138 147anti-parallel
Strand 3
D
176 185anti-parallel
Strand 4
D
171 173anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 6first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
70 75anti-parallel
Strand 4
E
62 66anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
13 14first strand
Strand 2
E
106 107parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 54first strand
Strand 2
E
45 49anti-parallel
Strand 3
E
33 38anti-parallel
Strand 4
E
84 90anti-parallel
Strand 5
E
97 98anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
53 54first strand
Strand 2
E
45 49anti-parallel
Strand 3
E
33 38anti-parallel
Strand 4
E
84 90anti-parallel
Strand 5
E
102 104anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 118first strand
Strand 2
E
129 139anti-parallel
Strand 3
E
173 182anti-parallel
Strand 4
E
159 163anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 155first strand
Strand 2
E
145 150anti-parallel
Strand 3
E
191 197anti-parallel
Strand 4
E
205 210anti-parallel
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