Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8F entry

There are 4 chains in PDB entry 6P8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21GLN 264
B
 GLY 18GLU 296
C
 PHE 24LYS 73
C
 GLU 75VAL 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6P8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 35Right-handed alpha
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
53 71Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
95 97Right-handed 310
Helix 6
AA6
A
98 115Right-handed alpha
Helix 7
AA7
A
120 128Right-handed alpha
Helix 8
AA8
A
133 148Right-handed alpha
Helix 9
AA9
A
156 166Right-handed alpha
Helix 10
AB1
A
171 190Right-handed alpha
Helix 11
AB2
A
191 196Right-handed 310
Helix 12
AB3
A
199 213Right-handed alpha
Helix 13
AB4
A
214 217Right-handed 310
Helix 14
AB5
A
225 237Right-handed alpha
Helix 15
AB6
A
240 263Right-handed alpha
Helix 16
AB7
B
47 61Right-handed alpha
Helix 17
AB8
B
96 103Right-handed alpha
Helix 18
AB9
B
110 131Right-handed alpha
Helix 19
AC1
B
179 184Right-handed alpha
Helix 20
AC2
B
190 207Right-handed alpha
Helix 21
AC3
B
215 228Right-handed alpha
Helix 22
AC4
B
242 246Right-handed 310
Helix 23
AC5
B
262 273Right-handed alpha
Helix 24
AC6
B
282 288Right-handed alpha
Helix 25
AC7
B
289 293Right-handed 310
Helix 26
AC8
C
37 61Right-handed alpha
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There are 3 sheets in PDB entry 6P8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 77first strand
Strand 2
B
84 91anti-parallel
Strand 3
B
31 39anti-parallel
Strand 4
B
21 24anti-parallel
Strand 5
C
75 76anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
151 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
68 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il