Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8H entry

There are 3 chains in PDB entry 6P8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 19ALA 262
B
 GLY 18ASP 295
C
 GLY 14ARG 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6P8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
53 71Right-handed alpha
Helix 3
AA3
A
76 90Right-handed alpha
Helix 4
AA4
A
98 115Right-handed alpha
Helix 5
AA5
A
120 128Right-handed alpha
Helix 6
AA6
A
133 148Right-handed alpha
Helix 7
AA7
A
156 168Right-handed alpha
Helix 8
AA8
A
171 192Right-handed alpha
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
199 213Right-handed alpha
Helix 11
AB2
A
225 237Right-handed alpha
Helix 12
AB3
A
240 261Right-handed alpha
Helix 13
AB4
B
47 61Right-handed alpha
Helix 14
AB5
B
96 103Right-handed alpha
Helix 15
AB6
B
110 131Right-handed alpha
Helix 16
AB7
B
179 184Right-handed alpha
Helix 17
AB8
B
191 207Right-handed alpha
Helix 18
AB9
B
215 228Right-handed alpha
Helix 19
AC1
B
242 246Right-handed 310
Helix 20
AC2
B
253 257Right-handed 310
Helix 21
AC3
B
262 273Right-handed alpha
Helix 22
AC4
B
282 289Right-handed alpha
Helix 23
AC5
C
26 47Right-handed alpha
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There are 2 sheets in PDB entry 6P8H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
32 39anti-parallel
Strand 3
B
84 91anti-parallel
Strand 4
B
71 77anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
151 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il