Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8R entry

There are 4 chains in PDB entry 6P8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 0ARG 166
B
 SER -1ARG 166
C
 ALA 1ARG 166
D
 SER 2ARG 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6P8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 31Right-handed alpha
Helix 2
AA2
A
35 41Right-handed alpha
Helix 3
AA3
A
41 55Right-handed alpha
Helix 4
AA4
A
96 107Right-handed alpha
Helix 5
AA5
B
8 31Right-handed alpha
Helix 6
AA6
B
35 41Right-handed alpha
Helix 7
AA7
B
41 55Right-handed alpha
Helix 8
AA8
B
96 107Right-handed alpha
Helix 9
AA9
C
9 31Right-handed alpha
Helix 10
AB1
C
35 41Right-handed alpha
Helix 11
AB2
C
41 55Right-handed alpha
Helix 12
AB3
C
96 107Right-handed alpha
Helix 13
AB4
D
9 31Right-handed alpha
Helix 14
AB5
D
35 41Right-handed alpha
Helix 15
AB6
D
41 55Right-handed alpha
Helix 16
AB7
D
96 107Right-handed alpha
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There are 5 sheets in PDB entry 6P8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
142 153anti-parallel
Strand 3
D
156 165anti-parallel
Strand 4
D
73 82anti-parallel
Strand 5
D
58 66anti-parallel
Strand 6
D
114 121anti-parallel
Strand 7
A
1 4anti-parallel
Strand 8
D
131 134anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
142 153anti-parallel
Strand 3
A
156 165anti-parallel
Strand 4
A
73 83anti-parallel
Strand 5
A
58 66anti-parallel
Strand 6
A
114 121anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
142 153anti-parallel
Strand 3
B
156 165anti-parallel
Strand 4
B
72 83anti-parallel
Strand 5
B
58 67anti-parallel
Strand 6
B
114 121anti-parallel
Strand 7
D
3 7anti-parallel
Strand 8
B
131 133anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
114 121first strand
Strand 2
C
58 67anti-parallel
Strand 3
C
72 83anti-parallel
Strand 4
C
156 165anti-parallel
Strand 5
C
142 149anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
151 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il