Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8S entry

There are 6 chains in PDB entry 6P8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5ARG 166
B
 ALA 5ARG 166
C
 THR 2GLY 133
D
 THR 2GLY 133
E
 GLU 1PRO 7
F
 ASN -1ASN 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6P8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 31Right-handed alpha
Helix 2
AA2
A
35 41Right-handed alpha
Helix 3
AA3
A
41 55Right-handed alpha
Helix 4
AA4
A
96 107Right-handed alpha
Helix 5
AA5
B
8 31Right-handed alpha
Helix 6
AA6
B
35 41Right-handed alpha
Helix 7
AA7
B
41 55Right-handed alpha
Helix 8
AA8
B
96 107Right-handed alpha
Helix 9
AA9
C
16 30Right-handed alpha
Helix 10
AB1
C
34 43Right-handed alpha
Helix 11
AB2
C
43 53Right-handed alpha
Helix 12
AB3
C
77 83Right-handed alpha
Helix 13
AB4
C
107 109Right-handed 310
Helix 14
AB5
C
110 120Right-handed alpha
Helix 15
AB6
C
131 133Right-handed 310
Helix 16
AB7
D
16 30Right-handed alpha
Helix 17
AB8
D
34 43Right-handed alpha
Helix 18
AB9
D
43 53Right-handed alpha
Helix 19
AC1
D
76 83Right-handed alpha
Helix 20
AC2
D
107 109Right-handed 310
Helix 21
AC3
D
110 120Right-handed alpha
Helix 22
AC4
D
131 133Right-handed 310
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There are 4 sheets in PDB entry 6P8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
142 153anti-parallel
Strand 3
A
156 165anti-parallel
Strand 4
A
73 83anti-parallel
Strand 5
A
58 66anti-parallel
Strand 6
A
114 121anti-parallel
Strand 7
E
2 5anti-parallel
Strand 8
A
131 134anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
142 153anti-parallel
Strand 3
B
156 165anti-parallel
Strand 4
B
72 83anti-parallel
Strand 5
B
58 67anti-parallel
Strand 6
B
114 121anti-parallel
Strand 7
F
2 5anti-parallel
Strand 8
B
131 133anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 10first strand
Strand 2
C
69 75parallel
Strand 3
C
61 64anti-parallel
Strand 4
C
101 106anti-parallel
Strand 5
C
125 129parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 10first strand
Strand 2
D
69 75parallel
Strand 3
D
61 64anti-parallel
Strand 4
D
101 106anti-parallel
Strand 5
D
125 129parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il