Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8U entry

There are 3 chains in PDB entry 6P8U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 300
B
 SER 2ARG 166
C
 ALA 0ASN 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6P8U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
18 37Right-handed alpha
Helix 3
AA3
A
49 52Right-handed 310
Helix 4
AA4
A
71 79Right-handed 310
Helix 5
AA5
A
80 97Right-handed alpha
Helix 6
AA6
A
155 169Right-handed alpha
Helix 7
AA7
A
173 186Right-handed alpha
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
199 210Right-handed alpha
Helix 10
AB1
A
217 233Right-handed alpha
Helix 11
AB2
A
246 250Right-handed 310
Helix 12
AB3
A
252 279Right-handed alpha
Helix 13
AB4
A
281 294Right-handed alpha
Helix 14
AB5
B
8 31Right-handed alpha
Helix 15
AB6
B
35 41Right-handed alpha
Helix 16
AB7
B
41 55Right-handed alpha
Helix 17
AB8
B
95 107Right-handed alpha
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There are 3 sheets in PDB entry 6P8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
128 136parallel
Strand 4
A
108 111anti-parallel
Strand 5
A
101 103anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 48first strand
Strand 2
A
63 69anti-parallel
Strand 3
A
128 136parallel
Strand 4
A
141 145anti-parallel
Strand 5
A
150 154anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
142 153anti-parallel
Strand 3
B
156 165anti-parallel
Strand 4
B
73 83anti-parallel
Strand 5
B
58 66anti-parallel
Strand 6
B
114 121anti-parallel
Strand 7
C
1 5anti-parallel
Strand 8
B
131 133anti-parallel
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