Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P8V entry

There are 5 chains in PDB entry 6P8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	ILE 308
B	VAL 3	ILE 308
C	VAL 3	ASP 309
D	VAL 3	ASP 309
E	PRO 5	ALA 80

There are113 helices in PDB entry 6P8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	12	Right-handed alpha
Helix 2	AA2	A	19	29	Right-handed alpha
Helix 3	AA3	A	32	48	Right-handed alpha
Helix 4	AA4	A	49	60	Right-handed alpha
Helix 5	AA5	A	63	72	Right-handed alpha
Helix 6	AA6	A	86	102	Right-handed alpha
Helix 7	AA7	A	112	116	Right-handed 310
Helix 8	AA8	A	122	142	Right-handed alpha
Helix 9	AA9	A	159	164	Right-handed alpha
Helix 10	AB1	A	173	193	Right-handed alpha
Helix 11	AB2	A	210	217	Right-handed alpha
Helix 12	AB3	A	227	240	Right-handed alpha
Helix 13	AB4	A	245	256	Right-handed alpha
Helix 14	AB5	A	267	273	Right-handed alpha
Helix 15	AB6	A	274	284	Right-handed alpha
Helix 16	AB7	A	290	301	Right-handed alpha
Helix 17	AB8	B	6	11	Right-handed alpha
Helix 18	AB9	B	19	29	Right-handed alpha
Helix 19	AC1	B	32	48	Right-handed alpha
Helix 20	AC2	B	49	60	Right-handed alpha
Helix 21	AC3	B	64	73	Right-handed alpha
Helix 22	AC4	B	86	103	Right-handed alpha
Helix 23	AC5	B	112	117	Right-handed 310
Helix 24	AC6	B	122	143	Right-handed alpha
Helix 25	AC7	B	159	164	Right-handed alpha
Helix 26	AC8	B	173	193	Right-handed alpha
Helix 27	AC9	B	205	209	Right-handed 310
Helix 28	AD1	B	210	216	Right-handed alpha
Helix 29	AD2	B	227	239	Right-handed alpha
Helix 30	AD3	B	245	256	Right-handed alpha
Helix 31	AD4	B	267	274	Right-handed alpha
Helix 32	AD5	B	274	284	Right-handed alpha
Helix 33	AD6	B	290	301	Right-handed alpha
Helix 34	AD7	C	6	12	Right-handed alpha
Helix 35	AD8	C	19	29	Right-handed alpha
Helix 36	AD9	C	32	48	Right-handed alpha
Helix 37	AE1	C	49	60	Right-handed alpha
Helix 38	AE2	C	63	73	Right-handed alpha
Helix 39	AE3	C	86	102	Right-handed alpha
Helix 40	AE4	C	112	117	Right-handed 310
Helix 41	AE5	C	122	143	Right-handed alpha
Helix 42	AE6	C	159	164	Right-handed alpha
Helix 43	AE7	C	173	193	Right-handed alpha
Helix 44	AE8	C	205	209	Right-handed 310
Helix 45	AE9	C	210	216	Right-handed alpha
Helix 46	AF1	C	227	239	Right-handed alpha
Helix 47	AF2	C	245	256	Right-handed alpha
Helix 48	AF3	C	267	274	Right-handed alpha
Helix 49	AF4	C	274	284	Right-handed alpha
Helix 50	AF5	C	290	301	Right-handed alpha
Helix 51	AF6	D	6	12	Right-handed alpha
Helix 52	AF7	D	19	29	Right-handed alpha
Helix 53	AF8	D	32	48	Right-handed alpha
Helix 54	AF9	D	49	60	Right-handed alpha
Helix 55	AG1	D	63	73	Right-handed alpha
Helix 56	AG2	D	86	102	Right-handed alpha
Helix 57	AG3	D	112	117	Right-handed 310
Helix 58	AG4	D	122	142	Right-handed alpha
Helix 59	AG5	D	159	164	Right-handed alpha
Helix 60	AG6	D	173	193	Right-handed alpha
Helix 61	AG7	D	205	209	Right-handed 310
Helix 62	AG8	D	210	216	Right-handed alpha
Helix 63	AG9	D	227	240	Right-handed alpha
Helix 64	AH1	D	245	257	Right-handed alpha
Helix 65	AH2	D	267	274	Right-handed alpha
Helix 66	AH3	D	274	284	Right-handed alpha
Helix 67	AH4	D	290	301	Right-handed alpha
Helix 68	AH5	E	6	12	Right-handed alpha
Helix 69	AH6	E	19	29	Right-handed alpha
Helix 70	AH7	E	32	48	Right-handed alpha
Helix 71	AH8	E	49	60	Right-handed alpha
Helix 72	AH9	E	63	72	Right-handed alpha
Helix 73	AI1	E	86	103	Right-handed alpha
Helix 74	AI2	E	122	142	Right-handed alpha
Helix 75	AI3	E	160	165	Right-handed alpha
Helix 76	AI4	E	173	193	Right-handed alpha
Helix 77	AI5	E	210	216	Right-handed alpha
Helix 78	AI6	E	227	239	Right-handed alpha
Helix 79	AI7	E	245	257	Right-handed alpha
Helix 80	AI8	E	267	274	Right-handed alpha
Helix 81	AI9	E	274	284	Right-handed alpha
Helix 82	AJ1	E	290	301	Right-handed alpha
Helix 83	AJ2	F	7	12	Right-handed alpha
Helix 84	AJ3	F	19	29	Right-handed alpha
Helix 85	AJ4	F	32	48	Right-handed alpha
Helix 86	AJ5	F	48	60	Right-handed alpha
Helix 87	AJ6	F	64	72	Right-handed alpha
Helix 88	AJ7	F	86	103	Right-handed alpha
Helix 89	AJ8	F	125	143	Right-handed alpha
Helix 90	AJ9	F	177	193	Right-handed alpha
Helix 91	AK1	F	210	216	Right-handed alpha
Helix 92	AK2	F	227	239	Right-handed alpha
Helix 93	AK3	F	245	256	Right-handed alpha
Helix 94	AK4	F	267	274	Right-handed alpha
Helix 95	AK5	F	274	284	Right-handed alpha
Helix 96	AK6	F	290	301	Right-handed alpha
Helix 97	AK7	G	7	19	Right-handed alpha
Helix 98	AK8	G	22	47	Right-handed alpha
Helix 99	AK9	G	59	64	Right-handed alpha
Helix 100	AL1	G	87	103	Right-handed alpha
Helix 101	AL2	G	107	109	Right-handed 310
Helix 102	AL3	G	139	143	Right-handed 310
Helix 103	AL4	G	158	173	Right-handed alpha
Helix 104	AL5	G	175	195	Right-handed alpha
Helix 105	AL6	G	201	215	Right-handed alpha
Helix 106	AL7	G	221	237	Right-handed alpha
Helix 107	AL8	G	249	254	Right-handed 310
Helix 108	AL9	G	277	300	Right-handed alpha
Helix 109	AM1	G	303	316	Right-handed alpha
Helix 110	AM2	H	15	38	Right-handed alpha
Helix 111	AM3	H	41	59	Right-handed alpha
Helix 112	AM4	H	116	122	Right-handed alpha
Helix 113	AM5	H	123	131	Right-handed alpha

There are 10 sheets in PDB entry 6P8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	151	157	parallel
Strand 4	A	197	203	parallel
Strand 5	A	76	81	parallel
Strand 6	A	219	223	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	106	110	anti-parallel
Strand 3	B	152	157	parallel
Strand 4	B	197	203	parallel
Strand 5	B	76	81	parallel
Strand 6	B	217	223	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	17	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	152	157	parallel
Strand 4	C	197	203	parallel
Strand 5	C	76	81	parallel
Strand 6	C	219	223	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	105	110	anti-parallel
Strand 3	D	151	157	parallel
Strand 4	D	197	203	parallel
Strand 5	D	76	81	parallel
Strand 6	D	217	223	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	17	first strand
Strand 2	E	105	111	anti-parallel
Strand 3	E	151	157	parallel
Strand 4	E	197	203	parallel
Strand 5	E	76	81	parallel
Strand 6	E	217	223	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	17	first strand
Strand 2	F	106	109	anti-parallel
Strand 3	F	153	157	parallel
Strand 4	F	197	203	parallel
Strand 5	F	76	81	parallel
Strand 6	F	217	223	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	57	first strand
Strand 2	G	73	79	anti-parallel
Strand 3	G	129	135	parallel
Strand 4	G	118	120	anti-parallel
Strand 5	G	111	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	52	57	first strand
Strand 2	G	73	79	anti-parallel
Strand 3	G	129	135	parallel
Strand 4	G	144	147	anti-parallel
Strand 5	G	154	157	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	115	first strand
Strand 2	H	61	70	anti-parallel
Strand 3	H	73	84	anti-parallel
Strand 4	H	145	146	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	115	first strand
Strand 2	H	61	70	anti-parallel
Strand 3	H	73	84	anti-parallel
Strand 4	H	162	169	anti-parallel
Strand 5	H	149	157	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8V