Analysis of interatomic Contacts of Structural Units in PDB entry:
6P9X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P9X entry

There are 6 chains in PDB entry 6P9X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	GLU 3	ASN 340
G	ALA 7	ARG 62
N	GLN 1	VAL 126
R	SER 112	TRP 381
P	GLU 2	ASN 34

There are 28 helices in PDB entry 6P9X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	40	Right-handed alpha
Helix 2	AA2	A	265	279	Right-handed alpha
Helix 3	AA3	A	312	316	Right-handed 310
Helix 4	AA4	A	331	350	Right-handed alpha
Helix 5	AA5	A	372	391	Right-handed alpha
Helix 6	AA6	B	5	25	Right-handed alpha
Helix 7	AA7	B	29	34	Right-handed alpha
Helix 8	AA8	G	9	22	Right-handed alpha
Helix 9	AA9	G	29	44	Right-handed alpha
Helix 10	AB1	N	28	32	Right-handed 310
Helix 11	AB2	N	87	91	Right-handed 310
Helix 12	AB3	R	113	144	Right-handed alpha
Helix 13	AB4	R	149	175	Right-handed alpha
Helix 14	AB5	R	177	184	Right-handed alpha
Helix 15	AB6	R	185	207	Right-handed alpha
Helix 16	AB7	R	207	219	Right-handed alpha
Helix 17	AB8	R	227	236	Right-handed alpha
Helix 18	AB9	R	238	253	Right-handed alpha
Helix 19	AC1	R	256	260	Right-handed 310
Helix 20	AC2	R	269	302	Right-handed alpha
Helix 21	AC3	R	304	319	Right-handed alpha
Helix 22	AC4	R	319	324	Right-handed alpha
Helix 23	AC5	R	325	330	Right-handed alpha
Helix 24	AC6	R	337	354	Right-handed alpha
Helix 25	AC7	R	354	364	Right-handed alpha
Helix 26	AC8	R	367	380	Right-handed alpha
Helix 27	AC9	P	6	8	Right-handed 310
Helix 28	AD1	P	9	32	Right-handed alpha

There are 11 sheets in PDB entry 6P9X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	213	214	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P9X

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P9X