Analysis of interatomic Contacts of Structural Units in PDB entry:
6P9Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6P9Y entry

There are 6 chains in PDB entry 6P9Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 394
B	GLU 3	ASN 340
G	SER 8	ARG 62
N	GLN 1	VAL 126
P	HIS 1	LEU 27
R	TYR 148	TRP 418

There are 28 helices in PDB entry 6P9Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	40	Right-handed alpha
Helix 2	AA2	A	265	278	Right-handed alpha
Helix 3	AA3	A	280	285	Right-handed 310
Helix 4	AA4	A	312	317	Right-handed 310
Helix 5	AA5	A	331	352	Right-handed alpha
Helix 6	AA6	A	372	391	Right-handed alpha
Helix 7	AA7	B	4	26	Right-handed alpha
Helix 8	AA8	B	29	35	Right-handed alpha
Helix 9	AA9	G	9	23	Right-handed alpha
Helix 10	AB1	G	29	34	Right-handed alpha
Helix 11	AB2	G	37	42	Right-handed alpha
Helix 12	AB3	G	44	48	Right-handed 310
Helix 13	AB4	N	28	32	Right-handed 310
Helix 14	AB5	N	62	65	Right-handed 310
Helix 15	AB6	N	87	91	Right-handed 310
Helix 16	AB7	P	2	27	Right-handed alpha
Helix 17	AB8	R	149	164	Right-handed alpha
Helix 18	AB9	R	165	178	Right-handed alpha
Helix 19	AC1	R	185	211	Right-handed alpha
Helix 20	AC2	R	223	256	Right-handed alpha
Helix 21	AC3	R	264	274	Right-handed alpha
Helix 22	AC4	R	275	289	Right-handed alpha
Helix 23	AC5	R	302	337	Right-handed alpha
Helix 24	AC6	R	347	363	Right-handed alpha
Helix 25	AC7	R	364	367	Right-handed 310
Helix 26	AC8	R	378	386	Right-handed alpha
Helix 27	AC9	R	391	401	Right-handed alpha
Helix 28	AD1	R	404	417	Right-handed alpha

There are 11 sheets in PDB entry 6P9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	248	parallel
Strand 5	A	287	291	parallel
Strand 6	A	359	361	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	208	211	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	253	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	22	25	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	95	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	17	20	first strand
Strand 2	N	79	84	anti-parallel
Strand 3	N	68	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6P9Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6P9Y