Analysis of interatomic Contacts of Structural Units in PDB entry:
6PA7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PA7 entry

There are 14 chains in PDB entry 6PA7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	ALA 135
B	LEU 22	GLY 102
C	ARG 11	LYS 118
D	LYS 28	ALA 121
E	LYS 37	ARG 134
F	LYS 20	GLY 102
G	THR 10	THR 120
H	ARG 27	LYS 122
I	T 2	T 167
J	A 1	A 166
K	HIS 613	VAL 912
N	LYS 542	PHE 767
P	HIS 613	VAL 912
S	LYS 542	PHE 767

There are 79 helices in PDB entry 6PA7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	57	Right-handed alpha
Helix 2	AA2	A	63	77	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	21	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	89	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	101	120	Right-handed alpha
Helix 18	AB9	E	42	57	Right-handed alpha
Helix 19	AC1	E	63	77	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	132	Right-handed alpha
Helix 22	AC4	F	24	29	Right-handed 310
Helix 23	AC5	F	30	41	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	93	Right-handed alpha
Helix 26	AC8	G	16	21	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	45	73	Right-handed alpha
Helix 29	AD2	G	79	89	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	34	44	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	101	120	Right-handed alpha
Helix 35	AD8	K	627	631	Right-handed 310
Helix 36	AD9	K	644	653	Right-handed alpha
Helix 37	AE1	K	666	678	Right-handed alpha
Helix 38	AE2	K	686	690	Right-handed 310
Helix 39	AE3	K	691	698	Right-handed alpha
Helix 40	AE4	K	729	742	Right-handed alpha
Helix 41	AE5	K	762	774	Right-handed alpha
Helix 42	AE6	K	783	785	Right-handed 310
Helix 43	AE7	K	860	868	Right-handed alpha
Helix 44	AE8	K	881	892	Right-handed alpha
Helix 45	AE9	K	894	903	Right-handed alpha
Helix 46	AF1	K	904	908	Right-handed 310
Helix 47	AF2	N	565	573	Right-handed alpha
Helix 48	AF3	N	588	598	Right-handed alpha
Helix 49	AF4	N	607	611	Right-handed 310
Helix 50	AF5	N	612	619	Right-handed alpha
Helix 51	AF6	N	647	663	Right-handed alpha
Helix 52	AF7	N	683	695	Right-handed alpha
Helix 53	AF8	N	730	735	Right-handed alpha
Helix 54	AF9	N	740	747	Right-handed alpha
Helix 55	AG1	N	755	760	Right-handed alpha
Helix 56	AG2	N	761	764	Right-handed 310
Helix 57	AG3	P	627	631	Right-handed 310
Helix 58	AG4	P	644	653	Right-handed alpha
Helix 59	AG5	P	666	678	Right-handed alpha
Helix 60	AG6	P	686	690	Right-handed 310
Helix 61	AG7	P	691	698	Right-handed alpha
Helix 62	AG8	P	729	742	Right-handed alpha
Helix 63	AG9	P	762	774	Right-handed alpha
Helix 64	AH1	P	783	785	Right-handed 310
Helix 65	AH2	P	860	868	Right-handed alpha
Helix 66	AH3	P	881	892	Right-handed alpha
Helix 67	AH4	P	894	903	Right-handed alpha
Helix 68	AH5	P	904	908	Right-handed 310
Helix 69	AH6	S	566	573	Right-handed alpha
Helix 70	AH7	S	588	597	Right-handed alpha
Helix 71	AH8	S	607	611	Right-handed 310
Helix 72	AH9	S	612	619	Right-handed alpha
Helix 73	AI1	S	647	663	Right-handed alpha
Helix 74	AI2	S	683	695	Right-handed alpha
Helix 75	AI3	S	730	738	Right-handed alpha
Helix 76	AI4	S	741	748	Right-handed alpha
Helix 77	AI5	S	748	753	Right-handed alpha
Helix 78	AI6	S	753	760	Right-handed alpha
Helix 79	AI7	S	762	767	Right-handed alpha

There are 19 sheets in PDB entry 6PA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	681	684	first strand
Strand 2	K	657	663	parallel
Strand 3	K	634	638	parallel
Strand 4	K	703	707	parallel
Strand 5	K	752	758	parallel
Strand 6	K	791	796	anti-parallel
Strand 7	K	778	781	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	788	789	first strand
Strand 2	K	830	831	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	823	825	first strand
Strand 2	K	850	852	anti-parallel
Strand 3	K	856	857	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	578	580	first strand
Strand 2	N	555	560	parallel
Strand 3	N	624	627	parallel
Strand 4	N	673	678	parallel
Strand 5	N	712	717	anti-parallel
Strand 6	N	699	702	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	582	583	first strand
Strand 2	N	603	604	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	681	684	first strand
Strand 2	P	657	663	parallel
Strand 3	P	634	638	parallel
Strand 4	P	703	707	parallel
Strand 5	P	752	758	parallel
Strand 6	P	791	796	anti-parallel
Strand 7	P	778	781	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	788	789	first strand
Strand 2	P	830	831	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	823	825	first strand
Strand 2	P	850	852	anti-parallel
Strand 3	P	856	857	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	603	605	first strand
Strand 2	S	578	584	parallel
Strand 3	S	555	559	parallel
Strand 4	S	624	627	parallel
Strand 5	S	673	679	parallel
Strand 6	S	713	717	anti-parallel
Strand 7	S	699	701	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PA7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PA7