Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PAJ entry

There are 2 chains in PDB entry 6PAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 356GLU 583
B
 ASN 355GLU 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6PAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
356 387Right-handed alpha
Helix 2
AA2
A
392 426Right-handed alpha
Helix 3
AA3
A
437 448Right-handed alpha
Helix 4
AA4
A
448 455Right-handed alpha
Helix 5
AA5
A
472 489Right-handed alpha
Helix 6
AA6
A
547 558Right-handed alpha
Helix 7
AA7
B
356 387Right-handed alpha
Helix 8
AA8
B
392 426Right-handed alpha
Helix 9
AA9
B
437 456Right-handed alpha
Helix 10
AB1
B
472 490Right-handed alpha
Helix 11
AB2
B
546 559Right-handed alpha
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There are 4 sheets in PDB entry 6PAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
468 471anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 461first strand
Strand 2
A
496 503parallel
Strand 3
A
507 514anti-parallel
Strand 4
A
572 580anti-parallel
Strand 5
A
562 568anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
433 436first strand
Strand 2
B
468 471anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 462first strand
Strand 2
B
496 503parallel
Strand 3
B
507 514anti-parallel
Strand 4
B
573 580anti-parallel
Strand 5
B
562 567anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il