Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PAK entry

There are 2 chains in PDB entry 6PAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 277
B
 ALA 1SER 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6PAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
12 19Right-handed alpha
Helix 3
AA3
A
63 74Right-handed alpha
Helix 4
AA4
A
103 117Right-handed alpha
Helix 5
AA5
A
132 145Right-handed alpha
Helix 6
AA6
A
220 239Right-handed alpha
Helix 7
AA7
A
243 254Right-handed alpha
Helix 8
AA8
A
260 265Right-handed alpha
Helix 9
AA9
A
270 275Right-handed alpha
Helix 10
AB1
B
5 11Right-handed alpha
Helix 11
AB2
B
12 19Right-handed alpha
Helix 12
AB3
B
63 74Right-handed alpha
Helix 13
AB4
B
103 117Right-handed alpha
Helix 14
AB5
B
132 145Right-handed alpha
Helix 15
AB6
B
220 239Right-handed alpha
Helix 16
AB7
B
243 254Right-handed alpha
Helix 17
AB8
B
260 265Right-handed alpha
Helix 18
AB9
B
270 275Right-handed alpha
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There are 4 sheets in PDB entry 6PAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
89 94parallel
Strand 3
A
27 32parallel
Strand 4
A
121 124parallel
Strand 5
A
148 152parallel
Strand 6
A
176 181parallel
Strand 7
A
199 202parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
214 218anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
89 94parallel
Strand 3
B
27 32parallel
Strand 4
B
121 124parallel
Strand 5
B
148 152parallel
Strand 6
B
176 181parallel
Strand 7
B
199 202parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 210first strand
Strand 2
B
214 218anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il