Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PAL entry

There are 2 chains in PDB entry 6PAL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23ASP 429
B
 GLY 25ASP 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6PAL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 61Right-handed alpha
Helix 2
AA2
A
72 87Right-handed alpha
Helix 3
AA3
A
99 104Right-handed 310
Helix 4
AA4
A
105 124Right-handed alpha
Helix 5
AA5
A
138 141Right-handed 310
Helix 6
AA6
A
145 163Right-handed alpha
Helix 7
AA7
A
175 186Right-handed alpha
Helix 8
AA8
A
202 210Right-handed alpha
Helix 9
AA9
A
241 257Right-handed alpha
Helix 10
AB1
A
300 312Right-handed alpha
Helix 11
AB2
A
331 335Right-handed 310
Helix 12
AB3
B
54 61Right-handed alpha
Helix 13
AB4
B
72 87Right-handed alpha
Helix 14
AB5
B
99 104Right-handed 310
Helix 15
AB6
B
105 124Right-handed alpha
Helix 16
AB7
B
138 141Right-handed 310
Helix 17
AB8
B
145 163Right-handed alpha
Helix 18
AB9
B
175 186Right-handed alpha
Helix 19
AC1
B
202 210Right-handed alpha
Helix 20
AC2
B
241 257Right-handed alpha
Helix 21
AC3
B
300 312Right-handed alpha
Helix 22
AC4
B
331 335Right-handed 310
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There are 9 sheets in PDB entry 6PAL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
35 39anti-parallel
Strand 3
A
42 43anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
65 68parallel
Strand 3
A
89 94parallel
Strand 4
A
129 136parallel
Strand 5
A
167 173parallel
Strand 6
A
191 195parallel
Strand 7
A
215 221parallel
Strand 8
A
263 268parallel
Strand 9
A
46 50parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
293 296anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 327first strand
Strand 2
A
344 350anti-parallel
Strand 3
A
394 397anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
418 428parallel
Strand 3
A
403 412anti-parallel
Strand 4
A
359 366anti-parallel
Strand 5
A
383 390anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
36 39anti-parallel
Strand 3
B
42 43anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
65 68parallel
Strand 3
B
89 94parallel
Strand 4
B
129 136parallel
Strand 5
B
167 172parallel
Strand 6
B
191 195parallel
Strand 7
B
215 221parallel
Strand 8
B
263 268parallel
Strand 9
B
46 50parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 327first strand
Strand 2
B
344 350anti-parallel
Strand 3
B
394 397anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
418 428parallel
Strand 3
B
403 412anti-parallel
Strand 4
B
359 366anti-parallel
Strand 5
B
383 390anti-parallel
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