Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PAO entry

There are 2 chains in PDB entry 6PAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 34GLU 599
B
 ALA 33GLU 599
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6PAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 69Right-handed alpha
Helix 2
AA2
A
72 126Right-handed alpha
Helix 3
AA3
A
128 135Right-handed alpha
Helix 4
AA4
A
136 179Right-handed alpha
Helix 5
AA5
A
182 230Right-handed alpha
Helix 6
AA6
A
230 238Right-handed alpha
Helix 7
AA7
A
239 291Right-handed alpha
Helix 8
AA8
A
299 340Right-handed alpha
Helix 9
AA9
A
399 408Right-handed alpha
Helix 10
AB1
A
429 436Right-handed alpha
Helix 11
AB2
A
450 457Right-handed alpha
Helix 12
AB3
A
463 474Right-handed alpha
Helix 13
AB4
A
476 483Right-handed alpha
Helix 14
AB5
A
485 489Right-handed 310
Helix 15
AB6
A
492 496Right-handed 310
Helix 16
AB7
A
499 515Right-handed alpha
Helix 17
AB8
A
529 544Right-handed alpha
Helix 18
AB9
A
578 585Right-handed alpha
Helix 19
AC1
A
587 597Right-handed alpha
Helix 20
AC2
B
35 66Right-handed alpha
Helix 21
AC3
B
74 126Right-handed alpha
Helix 22
AC4
B
128 135Right-handed alpha
Helix 23
AC5
B
136 179Right-handed alpha
Helix 24
AC6
B
181 230Right-handed alpha
Helix 25
AC7
B
230 238Right-handed alpha
Helix 26
AC8
B
239 291Right-handed alpha
Helix 27
AC9
B
299 340Right-handed alpha
Helix 28
AD1
B
399 408Right-handed alpha
Helix 29
AD2
B
429 436Right-handed alpha
Helix 30
AD3
B
450 457Right-handed alpha
Helix 31
AD4
B
463 474Right-handed alpha
Helix 32
AD5
B
476 483Right-handed alpha
Helix 33
AD6
B
485 489Right-handed 310
Helix 34
AD7
B
492 496Right-handed 310
Helix 35
AD8
B
499 515Right-handed alpha
Helix 36
AD9
B
524 527Right-handed 310
Helix 37
AE1
B
529 544Right-handed alpha
Helix 38
AE2
B
578 585Right-handed alpha
Helix 39
AE3
B
587 597Right-handed alpha
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There are 4 sheets in PDB entry 6PAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 384first strand
Strand 2
A
361 368anti-parallel
Strand 3
A
415 420anti-parallel
Strand 4
A
423 424anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 440first strand
Strand 2
A
518 522parallel
Strand 3
A
548 552parallel
Strand 4
A
389 393parallel
Strand 5
A
564 569parallel
Strand 6
A
572 577anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 384first strand
Strand 2
B
361 368anti-parallel
Strand 3
B
415 420anti-parallel
Strand 4
B
423 424anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 440first strand
Strand 2
B
518 522parallel
Strand 3
B
548 552parallel
Strand 4
B
389 393parallel
Strand 5
B
564 569parallel
Strand 6
B
572 577anti-parallel
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