Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PAT entry

There are 2 chains in PDB entry 6PAT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 281TYR 661
B
 MET 1LYS 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6PAT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
306 318Right-handed alpha
Helix 2
AA2
A
321 326Right-handed alpha
Helix 3
AA3
A
337 347Right-handed alpha
Helix 4
AA4
A
404 459Right-handed alpha
Helix 5
AA5
A
463 470Right-handed alpha
Helix 6
AA6
A
502 522Right-handed alpha
Helix 7
AA7
A
546 559Right-handed alpha
Helix 8
AA8
A
560 563Right-handed 310
Helix 9
AA9
A
600 606Right-handed alpha
Helix 10
AB1
A
621 630Right-handed alpha
Helix 11
AB2
B
5 18Right-handed alpha
Helix 12
AB3
B
21 30Right-handed alpha
Helix 13
AB4
B
44 60Right-handed alpha
Helix 14
AB5
B
62 82Right-handed alpha
Helix 15
AB6
B
83 88Right-handed alpha
Helix 16
AB7
B
93 112Right-handed alpha
Helix 17
AB8
B
144 156Right-handed alpha
Helix 18
AB9
B
210 214Right-handed 310
Helix 19
AC1
B
231 238Right-handed alpha
Helix 20
AC2
B
245 250Right-handed alpha
Helix 21
AC3
B
264 269Right-handed alpha
Helix 22
AC4
B
334 383Right-handed alpha
Helix 23
AC5
B
388 401Right-handed alpha
Helix 24
AC6
B
420 425Right-handed alpha
Helix 25
AC7
B
436 445Right-handed alpha
Helix 26
AC8
B
483 498Right-handed alpha
Helix 27
AC9
B
534 548Right-handed alpha
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There are 5 sheets in PDB entry 6PAT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 372first strand
Strand 2
A
381 387anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
578 579anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 276first strand
Strand 2
B
297 299anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 415first strand
Strand 2
B
513 517anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 419first strand
Strand 2
B
509 510anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il