Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PAV entry

There are 3 chains in PDB entry 6PAV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 TYR 117GLN 496
D
 LYS 3PHE 9
A
 SER 116GLU 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6PAV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
119 123Right-handed 310
Helix 2
AA2
B
165 180Right-handed alpha
Helix 3
AA3
B
193 202Right-handed alpha
Helix 4
AA4
B
207 209Right-handed 310
Helix 5
AA5
B
252 255Right-handed 310
Helix 6
AA6
B
258 274Right-handed alpha
Helix 7
AA7
B
302 309Right-handed alpha
Helix 8
AA8
B
319 327Right-handed alpha
Helix 9
AA9
B
342 344Right-handed 310
Helix 10
AB1
B
345 357Right-handed alpha
Helix 11
AB2
B
358 360Right-handed 310
Helix 12
AB3
B
367 376Right-handed alpha
Helix 13
AB4
B
430 446Right-handed alpha
Helix 14
AB5
B
457 466Right-handed 310
Helix 15
AB6
B
487 491Right-handed 310
Helix 16
AB7
A
165 180Right-handed alpha
Helix 17
AB8
A
193 202Right-handed alpha
Helix 18
AB9
A
207 209Right-handed 310
Helix 19
AC1
A
252 255Right-handed 310
Helix 20
AC2
A
258 274Right-handed alpha
Helix 21
AC3
A
302 309Right-handed alpha
Helix 22
AC4
A
319 327Right-handed alpha
Helix 23
AC5
A
342 344Right-handed 310
Helix 24
AC6
A
345 357Right-handed alpha
Helix 25
AC7
A
358 360Right-handed 310
Helix 26
AC8
A
367 376Right-handed alpha
Helix 27
AC9
A
430 445Right-handed alpha
Helix 28
AD1
A
457 461Right-handed 310
Helix 29
AD2
A
487 491Right-handed 310
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There are 6 sheets in PDB entry 6PAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 160first strand
Strand 2
B
211 216anti-parallel
Strand 3
B
222 235anti-parallel
Strand 4
B
238 250anti-parallel
Strand 5
B
279 283parallel
Strand 6
B
468 479anti-parallel
Strand 7
B
292 300anti-parallel
Strand 8
B
449 453anti-parallel
Strand 9
B
418 421parallel
Strand 10
B
394 402anti-parallel
Strand 11
B
362 364first strand
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
382 388anti-parallel
Strand 3
B
394 402anti-parallel
Strand 4
B
418 421anti-parallel
Strand 5
B
449 453parallel
Strand 6
B
292 300anti-parallel
Strand 7
B
468 479anti-parallel
Strand 8
B
279 283anti-parallel
Strand 9
B
238 250parallel
Strand 10
B
222 235anti-parallel
Strand 11
B
425 426first strand
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
405 407anti-parallel
Strand 3
B
415 416anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
222 235anti-parallel
Strand 4
A
238 250anti-parallel
Strand 5
A
279 283parallel
Strand 6
A
468 479anti-parallel
Strand 7
A
290 300anti-parallel
Strand 8
A
449 452anti-parallel
Strand 9
A
418 421parallel
Strand 10
A
394 402anti-parallel
Strand 11
A
382 388anti-parallel
Strand 12
A
338 340anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
222 235anti-parallel
Strand 4
A
362 364anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
405 407anti-parallel
Strand 3
A
415 416anti-parallel
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