Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PAW entry

There are 8 chains in PDB entry 6PAW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 4	THR 319
B	PHE 4	THR 319
D	LEU 5	LYS 149
E	PHE 4	ALA 308
F	PHE 4	HIS 317
G	THR 80	THR 147
H	SER 82	THR 147
C	PHE 69	THR 147

There are 77 helices in PDB entry 6PAW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	71	Right-handed alpha
Helix 2	AA2	A	100	107	Right-handed alpha
Helix 3	AA3	A	112	133	Right-handed alpha
Helix 4	AA4	A	141	143	Right-handed 310
Helix 5	AA5	A	180	184	Right-handed 310
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	196	213	Right-handed alpha
Helix 8	AA8	A	221	231	Right-handed alpha
Helix 9	AA9	A	237	242	Right-handed alpha
Helix 10	AB1	A	245	256	Right-handed alpha
Helix 11	AB2	A	265	271	Right-handed alpha
Helix 12	AB3	A	279	289	Right-handed alpha
Helix 13	AB4	A	293	318	Right-handed alpha
Helix 14	AB5	B	8	11	Right-handed 310
Helix 15	AB6	B	57	71	Right-handed alpha
Helix 16	AB7	B	100	107	Right-handed alpha
Helix 17	AB8	B	112	133	Right-handed alpha
Helix 18	AB9	B	141	143	Right-handed 310
Helix 19	AC1	B	180	184	Right-handed 310
Helix 20	AC2	B	185	190	Right-handed alpha
Helix 21	AC3	B	196	213	Right-handed alpha
Helix 22	AC4	B	221	231	Right-handed alpha
Helix 23	AC5	B	237	242	Right-handed alpha
Helix 24	AC6	B	245	256	Right-handed alpha
Helix 25	AC7	B	265	271	Right-handed alpha
Helix 26	AC8	B	279	289	Right-handed alpha
Helix 27	AC9	B	293	318	Right-handed alpha
Helix 28	AD1	D	6	21	Right-handed alpha
Helix 29	AD2	D	29	40	Right-handed alpha
Helix 30	AD3	D	45	55	Right-handed alpha
Helix 31	AD4	D	65	79	Right-handed alpha
Helix 32	AD5	D	81	94	Right-handed alpha
Helix 33	AD6	D	102	114	Right-handed alpha
Helix 34	AD7	D	118	130	Right-handed alpha
Helix 35	AD8	D	138	147	Right-handed alpha
Helix 36	AD9	E	8	12	Right-handed alpha
Helix 37	AE1	E	57	71	Right-handed alpha
Helix 38	AE2	E	100	107	Right-handed alpha
Helix 39	AE3	E	112	133	Right-handed alpha
Helix 40	AE4	E	141	143	Right-handed 310
Helix 41	AE5	E	180	184	Right-handed 310
Helix 42	AE6	E	185	190	Right-handed alpha
Helix 43	AE7	E	196	213	Right-handed alpha
Helix 44	AE8	E	221	232	Right-handed alpha
Helix 45	AE9	E	237	242	Right-handed alpha
Helix 46	AF1	E	245	256	Right-handed alpha
Helix 47	AF2	E	265	271	Right-handed alpha
Helix 48	AF3	E	279	289	Right-handed alpha
Helix 49	AF4	E	292	297	Right-handed alpha
Helix 50	AF5	E	297	308	Right-handed alpha
Helix 51	AF6	F	8	11	Right-handed 310
Helix 52	AF7	F	57	71	Right-handed alpha
Helix 53	AF8	F	100	106	Right-handed alpha
Helix 54	AF9	F	112	133	Right-handed alpha
Helix 55	AG1	F	141	143	Right-handed 310
Helix 56	AG2	F	180	184	Right-handed 310
Helix 57	AG3	F	185	190	Right-handed alpha
Helix 58	AG4	F	196	213	Right-handed alpha
Helix 59	AG5	F	221	232	Right-handed alpha
Helix 60	AG6	F	237	242	Right-handed alpha
Helix 61	AG7	F	245	256	Right-handed alpha
Helix 62	AG8	F	265	272	Right-handed alpha
Helix 63	AG9	F	279	289	Right-handed alpha
Helix 64	AH1	F	293	316	Right-handed alpha
Helix 65	AH2	G	81	94	Right-handed alpha
Helix 66	AH3	G	102	113	Right-handed alpha
Helix 67	AH4	G	123	130	Right-handed alpha
Helix 68	AH5	G	138	147	Right-handed alpha
Helix 69	AH6	H	83	91	Right-handed alpha
Helix 70	AH7	H	105	113	Right-handed alpha
Helix 71	AH8	H	118	129	Right-handed alpha
Helix 72	AH9	H	138	147	Right-handed alpha
Helix 73	AI1	C	70	80	Right-handed alpha
Helix 74	AI2	C	81	94	Right-handed alpha
Helix 75	AI3	C	102	114	Right-handed alpha
Helix 76	AI4	C	118	130	Right-handed alpha
Helix 77	AI5	C	138	146	Right-handed alpha

There are 13 sheets in PDB entry 6PAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	21	first strand
Strand 2	A	25	32	anti-parallel
Strand 3	A	38	45	anti-parallel
Strand 4	A	88	94	anti-parallel
Strand 5	A	79	84	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	166	167	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	157	159	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	20	first strand
Strand 2	B	25	32	anti-parallel
Strand 3	B	38	45	anti-parallel
Strand 4	B	88	94	anti-parallel
Strand 5	B	79	84	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	136	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	157	159	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	21	first strand
Strand 2	E	25	32	anti-parallel
Strand 3	E	38	45	anti-parallel
Strand 4	E	88	94	anti-parallel
Strand 5	E	79	84	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	166	167	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	147	first strand
Strand 2	E	157	159	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	25	32	anti-parallel
Strand 3	F	18	21	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	25	32	anti-parallel
Strand 3	F	38	45	anti-parallel
Strand 4	F	88	94	anti-parallel
Strand 5	F	79	84	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	136	first strand
Strand 2	F	166	167	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	147	first strand
Strand 2	F	157	159	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PAW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PAW